SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50545

Length: 421 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene50545
ATGGGGCTTCCTAGAGTTCTGTGATTCTACCATGAGTGGACCAAAACGTATGGTACGTTATTTTATCAATCGTCGAATTCTACTGTTTTCAAGGTTTCAACATGTATGAGACGCCTCTAAGCAGTTGTTTCTTTCAATACAATGGTTTTATTTACAGGTTGCATGTTCTTGCTCTGGTTTGGCCCTATTGCGAGAATAAATATCACAAACCCTGAGCACGTTAGAGAGATATTGTCTGTCAAATTTGACGATTATGAAAAGACGGACGCTCATGCAATTGTTAGGAAATTGGAAGGGGATGGGCTCTTGAACTTGAAAGGCAAGAAATGGATTCAGCACAGAGGAATCATAAACCCTGCTTTTCACATCGAACATCTGCGAGCCTTGATTCCAGTGATTGCTGAAAGTGCAACAATTAATG

Ace file of the UniGene sp_v1.1_unigene50545

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 n=1 Tax=Populus trichocarpa RepID=B9H987_POPTR	-	-	1.0e-28	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	cytochrome p450	-	-	2.51372e-28	56%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	2.51372e-28	56%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine metabolism	00360	2.51372e-28	56%
Blast2go	Methane metabolism	00680	2.51372e-28	56%
Blast2go	Phenylpropanoid biosynthesis	00940	2.51372e-28	56%
Blast2go	Biosynthesis of phenylpropanoids	01061	2.51372e-28	56%
Blast2go	Metabolic pathways	01100	2.51372e-28	56%
Blast2go	Biosynthesis of secondary metabolites	01110	2.51372e-28	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	2.51372e-28	56%
Blast2go	brassinosteroid metabolic process	GO:0016131	Biological Process	2.51372e-28	56%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	2.51372e-28	56%
Blast2go	response to light stimulus	GO:0009416	Biological Process	2.51372e-28	56%
Blast2go	protein binding	GO:0005515	Molecular Function	2.51372e-28	56%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	2.51372e-28	56%
Blast2go	steroid hydroxylase activity	GO:0008395	Molecular Function	2.51372e-28	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	2.51372e-28	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 339 aas, your sequence is shorter than subject: 140 - 517

Fln protein: MGLPRVL*FYHEWTKTYGTLFYQSSNSTVFKVSTCMRRL*AVVSFNTMVLFTGCMFLLWFGPIARINITNPEHVREILSVKFDDYEKTDAHAIVRKLEGDGLLNLKGKKWIQHRGIINPAFHIEHLRALIPVIAESATIN

Protein Length: 141

Fln nts: ATGGGGCTTCCTAGAGTTCTGTGATTCTACCATGAGTGGACCAAAACGTATGGTACGTTATTTTATCAATCGTCGAATTCTACTGTTTTCAAGGTTTCAACATGTATGAGACGCCTCTAAGCAGTTGTTTCTTTCAATACAATGGTTTTATTTACAGGTTGCATGTTCTTGCTCTGGTTTGGCCCTATTGCGAGAATAAATATCACAAACCCTGAGCACGTTAGAGAGATATTGTCTGTCAAATTTGACGATTATGAAAAGACGGACGCTCATGCAATTGTTAGGAAATTGGAAGGGGATGGGCTCTTGAACTTGAAAGGCAAGAAATGGATTCAGCACAGAGGAATCATAAACCCTGCTTTTCACATCGAACATCTGCGAGCCTTGATTCCAGTGATTGCTGAAAGTGCAACAATTAATG

Fln Alignment:

sp_v1.1_unigene50545___LPRVL*FYHEWTKTYGTLFYQSSNSTVFKVSTCMRRL*AVVSFNTMVLFTGCMFLLWFGPIARINITNPEHVREILSVKFDDYEKTDAHAIVRKLEGDGLLNLKGKKWIQHRGIINPAFHIEHLRALIPVIAES
A9NWW9_______________VPRVLPYYHHWTKTYGK-----------------------------------DFIYWVGSKPRLNVPHPELIKEILSNKFGHYENISSNPLGRQLVGQGLVGLRGEKWVQHRRIINPAFHLDFLKGMVPTIVES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain