SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50389

Length: 513 nt

UniGene Fasta

>sp_v1.1_unigene50389
TTTCAGGCTCCTGATCTGCACAAAGCATTCCAAAAATCTTCCAAACTCATCTCTTAAAGGGGTTCTAGCACCAGAATTGGCCCTTCTAGCTTCGCTGGGGACACTGAACCTTCGTGCAAACAATATACTGGGTACCATACCGAGAGAACTTGGTCAACTAAAGAATCTACAGAATTTGGATCTGGATTTGAATTGGTTTAGTGGTGCCATTCCCAATGAAATTGGAAATTTGTCAAACATTGCCATAATATCCCTGGAGGGCAATAATTTGGCAGGTACCATAGCTCCAGAACAGCAGTTGACTCGGTCTTGGGTGCCAATTCCAACAACTTGGGTAAAAGTGAGCTTACAGTTAGCCATTTGAACCAGCTGTTCCCATGGCCAGATTACACAATTTGAAAACTTAATGTGTACAAGATCAAAATTCATTCAGTAAATAGCAATTTTGAGCATTGAAATAGATAATAAGAGCCAGAGTTCCCATAGCTGACCAATCTCGTAGACAATCAGTGA

Ace file of the UniGene sp_v1.1_unigene50389

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat transmembrane protein kinase, putative	-	-	9.0e-06	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	unknown [Picea sitchensis]	-	-	8.19962e-14	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	8.19962e-14	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLZ2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 283 aas, your sequence is shorter than subject: 121 - 514

Fln protein: FRLLICTKHSKNLPNSSLKGVLAPELALLASLGTLNLRANNILGTIPRELGQLKNLQNLDLDLNWFSGAIPNEIGNLSNIAIISLEGNNLAGTIAPEQQLTRSWVPIPTTWVKVSLQLAI*

Protein Length: 122

Fln nts: TTTCAGGCTCCTGATCTGCACAAAGCATTCCAAAAATCTTCCAAACTCATCTCTTAAAGGGGTTCTAGCACCAGAATTGGCCCTTCTAGCTTCGCTGGGGACACTGAACCTTCGTGCAAACAATATACTGGGTACCATACCGAGAGAACTTGGTCAACTAAAGAATCTACAGAATTTGGATCTGGATTTGAATTGGTTTAGTGGTGCCATTCCCAATGAAATTGGAAATTTGTCAAACATTGCCATAATATCCCTGGAGGGCAATAATTTGGCAGGTACCATAGCTCCAGAACAGCAGTTGACTCGGTCTTGGGTGCCAATTCCAACAACTTGGGTAAAAGTGAGCTTACAGTTAGCCATTTGAACCAGCTGTTCCCATGGCCAGATTACACAATTTGAAAACTTAATGTGTACAAGATCAAAATTCATTCAGTAAATAGCAATTTTGAGCATTGAAATAGATAATAAGAGCCAGAGTTCCCATAGCTGACCAATCTCGTAGACAATCAGTGA

Fln Alignment:

sp_v1.1_unigene50389___NLPNSSLKGVLAPEXXXXXXXXXXXXXXNNILGTIPREXXXXXXXXXXXXXXXWFSGAIPNEIGNLSNIAIISLEGNNLAGTIAPE
B8LLZ2_______________NLPRSSLKGFLAPELGLLASLQTLNLRANNILGAIPRELGRLKNLQNLDLAQNQLTGAIPNEIGNLSSIARIFLEGNNLAGSIPPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain