SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50350

Length: 320 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene50350
CGTCGTGACCTTGGCTGTCACTCATTTTTTAATCAAAGGACGGATAATCCATTACTTCGCATCCAAACGGTATTGCTGATAGAGAATGAATATGGAAATGTTGGGGTGCTTTTCCAGGCGGTTCTTCATATGTGAAATGGGCAGGAAGTATGGCAGTGGGATTGAATACCGGTGTTCCTTGGGTCATGTGTAAACAACCTGATGCACCAGATCCAGTAATCAACACTTGTGATGGTATGTCTTGTGGAGATACATTTGTTGGCCCCAACTCAAACAACAAGCCTAGGATGTGGACAGAGGCTTGGACTGCTTGGTTTCAA

Ace file of the UniGene sp_v1.1_unigene50350

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-galactosidase 6 n=2 Tax=Arabidopsis RepID=BGAL6_ARATH	-	-	1.0e-28	75%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	beta-galactosidase 6	-	-	1.92585e-28	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-galactosidase.	EC:3.2.1.23	-	1.92585e-28	83%

Source	KEGGs	Term	e value	Identity
Blast2go	Galactose metabolism	00052	1.92585e-28	83%
Blast2go	Other glycan degradation	00511	1.92585e-28	83%
Blast2go	Glycosaminoglycan degradation	00531	1.92585e-28	83%
Blast2go	Sphingolipid metabolism	00600	1.92585e-28	83%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	1.92585e-28	83%
Blast2go	Metabolic pathways	01100	1.92585e-28	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall modification	GO:0009827	Biological Process	1.92585e-28	83%
Blast2go	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	1.92585e-28	83%
Blast2go	beta-galactosidase activity	GO:0004565	Molecular Function	1.92585e-28	83%
Blast2go	cell wall	GO:0005618	Cellular Component	1.92585e-28	83%
Blast2go	apoplast	GO:0048046	Cellular Component	1.92585e-28	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 35	IPR001944	-	1.92585e-28	83%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	1.92585e-28	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 598 aas, your sequence is shorter than subject: 106 - 861

Fln protein: S*PWLSLIF*SKDG*SITSHPNGIADRE*IWKCWGAFPGGSSYVKWAGSMAVGLNTGVPWVMCKQPDAPDPVINTCDGMSCGDTFVGPNSNNKPRMWTEAWTAWFQ

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTAATCAAAGGACGGATAATCCATTACTTCGCATCCAAACGGTATTGCTGATAGAGAATGAATATGGAAATGTTGGGGTGCTTTTCCAGGCGGTTCTTCATATGTGAAATGGGCAGGAAGTATGGCAGTGGGATTGAATACCGGTGTTCCTTGGGTCATGTGTAAACAACCTGATGCACCAGATCCAGTAATCAACACTTGTGATGGTATGTCTTGTGGAGATACATTTGTTGGCCCCAACTCAAACAACAAGCCTAGGATGTGGACAGAGGCTTGGACTGCTTGGTTTCAA

Fln Alignment:

sp_v1.1_unigene50350___GSSYVKWAGSMAVGLNTGVPWVMCKQPDAPDPVINTCDGMSCGDTFVGPNSNNKPRMWTEAWTAWF
A9NUR2_______________GKSYVKWAASMAVGLNTGVPWVMCQQADAPDPIINTCNGFYC-DAFT-PNSPNKPKMWTENWSGWF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain