SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50341

Length: 422 nt

UniGene Fasta

>sp_v1.1_unigene50341
AGAAACACAAGCGTGTGGACATCAGAGCTATAAAAAATTGGGCCCGTCAAATCTTGCGTGGGCTGCTTTATCTGCACAGCCATGACCCACCCATTATTCACCGAGACCTCAAATGTGATAACATATTTGTCCGTGGTGATCTTGGCTGTGATGATTGGGGATCTTGGTTTGGCTGCAGTTCTTCATCACAGTCATGCAGCTCACAATGTTATAGTGTTAACAGTGATACGCATGGTAGAGCAGAAATCGTTAAGAAGCCTAAGTTGCTTATCAAGGTCAGATGGACACCTTGCGAGGAGAACAATATCGTCAGCATAGAGAAGAAGGATGATGACTATCCCAGCTAAAATCGTGCCAGCACATCCTGCTTGCTCTAGATAACCTTCGAGCTTGTCAATGTAAATGCCAAATATTATATTTTT

Ace file of the UniGene sp_v1.1_unigene50341

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinase, putative (EC:2.7.11.25)	-	-	5.0e-18	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	3.63823e-19	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	3.63823e-19	92%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	3.63823e-19	92%
Blast2go	Protein kinase-like domain	IPR011009	-	3.63823e-19	92%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	3.63823e-19	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSG2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 628 aas, your sequence is shorter than subject: 115 - 885

Fln protein: KHKRVDIRAIKNWARQILRGLLYLHSHDPPIIHRDLKCDNIFVRGDLGCDDWGSWFGCSSSSQSCSSQCYSVNSDTHGRAEIVKKPKLLIKVRWTPCEENNIVSIEKKDDDYPS*

Protein Length: 116

Fln nts: AGAAACACAAGCGTGTGGACATCAGAGCTATAAAAAATTGGGCCCGTCAAATCTTGCGTGGGCTGCTTTATCTGCACAGCCATGACCCACCCATTATTCACCGAGACCTCAAATGTGATAACATATTTGTCCGTGGTGATCTTGGCTGTGATGATTGGGGATCTTGGTTTGGCTGCAGTTCTTCATCACAGTCATGCAGCTCACAATGTTATAGTGTTAACAGTGATACGCATGGTAGAGCAGAAATCGTTAAGAAGCCTAAGTTGCTTATCAAGGTCAGATGGACACCTTGCGAGGAGAACAATATCGTCAGCATAGAGAAGAAGGATGATGACTATCCCAGCTAAAATCGTGCCAGCACATCCTGCTTGCTCTAGATAACCTTCGAGCTTGTCAATGTAAATGCCAAATATTATATTTTT

Fln Alignment:

sp_v1.1_unigene50341___KHKRVDIRAIKNWARQILRGLLYLHSHDPPIIHRDLKCDNIFVRGDLG
C0PSG2_______________KHKRVDLRAVKNWARQILRGLLYLHSHDPPIIHRDLKCDNIFVNGNQG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
320	66		33		0.997458
322	66		33		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain