SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50338

Length: 554 nt

UniGene Fasta

>sp_v1.1_unigene50338
ATGGGGATATTTCCGCTGAGCGGAGAGCAGAGGAGGCAATCAGCGCCGCGGTGGCCATGGCATTGCATTCACATTCGTTGCTTTGCAGTGGGAGGACTGCCAGTAGATTAGTTCCCATATTCGTCTTCTCCACTCACAGGACATTTCCACATTCAAGAACCGTTTATTTTCGAACAGAAAATGCTCTGCTTACCAAACAAGTCCATGCCATATCCTGCAGGCGTCTTACAGCAAAAGCCGCAGCCAATGAAGTCTTCTCGGCACCGGAACTGTCTAAGAATTTTGATTTCACTGCTGAAGAGCGAATATATAATTGGTGGGAGTCTCAGGGATACTTCAAACCTAACATTGATCTAGATGGACCACCTTTTGAATTTCCATGCCACCTCCTAATGTCACAGGAGCTTTGCACATGGGCCATGCCATGTTTGTTACTCTTGAGGATATTATGACTAGATATTGGCGGATGAAAGGTAGGCCAACATTGTGGCTCCCTGGCACTGACCATGCTGGCATTGCAACGCAACTGGTTGTGGAAAAAATGTTGGCTTCTG

Ace file of the UniGene sp_v1.1_unigene50338

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_47.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TF60_VITVI	-	-	8.00141e-43	90%
FL-Next	sp=Valyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Blast2go	protein	-	-	1.34385e-42	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93736

Fln msg: Overlapping hits, possible frame ERROR between 371 and 368, Distance to subject end: 877 aas, your sequence is shorter than subject: 184 - 1108

Fln protein: GDISAERRAEEAISAAVAMALHSHSLLCSGRTASRLVPIFVFSTHRTFPHSRTVYFRTENALLTKQVHAISCRRLTAKAAANEVFSAPELSKNFDFTAEERIYNWWESQGYFKPNIDLDGPxxxISMPPPNVTGALHMGHAMFVTLEDIMTRYWRMKGRPTLWLPGTDHAGIATQLVVEKMLAS

Protein Length: 185

Fln nts: ATGGGGATATTTCCGCTGAGCGGAGAGCAGAGGAGGCAATCAGCGCCGCGGTGGCCATGGCATTGCATTCACATTCGTTGCTTTGCAGTGGGAGGACTGCCAGTAGATTAGTTCCCATATTCGTCTTCTCCACTCACAGGACATTTCCACATTCAAGAACCGTTTATTTTCGAACAGAAAATGCTCTGCTTACCAAACAAGTCCATGCCATATCCTGCAGGCGTCTTACAGCAAAAGCCGCAGCCAATGAAGTCTTCTCGGCACCGGAACTGTCTAAGAATTTTGATTTCACTGCTGAAGAGCGAATATATAATTGGTGGGAGTCTCAGGGATACTTCAAACCTAACATTGATCTAGATGGACCAxxxxxxxxxATTTCCATGCCACCTCCTAATGTCACAGGAGCTTTGCACATGGGCCATGCCATGTTTGTTACTCTTGAGGATATTATGACTAGATATTGGCGGATGAAAGGTAGGCCAACATTGTGGCTCCCTGGCACTGACCATGCTGGCATTGCAACGCAACTGGTTGTGGAAAAAATGTTGGCTTCTG

Fln Alignment:

sp_v1.1_unigene50338___TAEERIYNWWESQGYFKPNIDLDGPPx*ISMPPPNVTGALHMGHAMFVTLEDIMTRYWRMKGRPTLWLPGTDHAGIATQLVVEKML
P93736_______________TVEKSWYAWWEKSDLFKADAKSSKPPxVIVLPPPNVTGALHIGHALTSAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain