SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50300

Length: 495 nt

UniGene Fasta

>sp_v1.1_unigene50300
ATGGGGGCCATCTTCATTACAAGATCTTTGGAACTCTAAACTCCATTGTAAATGGGATACCAAATCTCAAAGAAGACCATGAAGGAGTCTGGAAAGGTTGTGCTCTGGGAAATAATGCAAAGAAACCATTTGCATATAGTACATCTAGAGCTCAAGAGATTCTAGATCTCATCCACTTTGATGTATGTGGTCCCATGTCTAAATCACTTGGAGGTCATCTATATTATGTTACTTTCATTGATGATCATTCAAGGAAAACTTGGGTTTCTTTACTTAAATCTAAAGACGAAGTATTCATGAAATTTCAAGAATTCAAGGCAAAGGTAGAAAATCTTACAGAAAGAAAGATAAATATTCCAAGGCCAGACAATGGAGGCGAGTATACTTCTAAAGAACTCATTGCTTTCTGTAAGAAGGTTGGGATTAAGAGGGAGCTTATAGTTCCATACAATCCTGAGCATAATGGAGTAGCTGAACGAAAGAATAGAGCTATAG

Ace file of the UniGene sp_v1.1_unigene50300

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH	-	-	7.0e-35	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	copia-type polyprotein	-	-	1.3534e-34	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Integrase, catalytic core	IPR001584	-	1.3534e-34	62%
Blast2go	Ribonuclease H-like domain	IPR012337	-	1.3534e-34	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 164 - 407

Fln protein: GGHLHYKIFGTLNSIVNGIPNLKEDHEGVWKGCALGNNAKKPFAYSTSRAQEILDLIHFDVCGPMSKSLGGHLYYVTFIDDHSRKTWVSLLKSKDEVFMKFQEFKAKVENLTERKINIPRPDNGGEYTSKELIAFCKKVGIKRELIVPYNPEHNGVAERKNRAI

Protein Length: 165

Fln nts: ATGGGGGCCATCTTCATTACAAGATCTTTGGAACTCTAAACTCCATTGTAAATGGGATACCAAATCTCAAAGAAGACCATGAAGGAGTCTGGAAAGGTTGTGCTCTGGGAAATAATGCAAAGAAACCATTTGCATATAGTACATCTAGAGCTCAAGAGATTCTAGATCTCATCCACTTTGATGTATGTGGTCCCATGTCTAAATCACTTGGAGGTCATCTATATTATGTTACTTTCATTGATGATCATTCAAGGAAAACTTGGGTTTCTTTACTTAAATCTAAAGACGAAGTATTCATGAAATTTCAAGAATTCAAGGCAAAGGTAGAAAATCTTACAGAAAGAAAGATAAATATTCCAAGGCCAGACAATGGAGGCGAGTATACTTCTAAAGAACTCATTGCTTTCTGTAAGAAGGTTGGGATTAAGAGGGAGCTTATAGTTCCATACAATCCTGAGCATAATGGAGTAGCTGAACGAAAGAATAGAGCTATAG

Fln Alignment:

sp_v1.1_unigene50300___GHLHYKIFGTLN--SIVNGIPNLKEDHEGVWKGCALGNNAKKPFAYSTS-RAQEILDLIHFDVCGPMSK-SLGGHLYYVTFIDDHSRKTWVSLLKSKDEVFMKFQEFKAKVENLTERKINIPRPDNGGEYTSKELIAFCKKVGIKRELIVPYNPEHNGVAERKNRAI
B8LKX7_______________GHLNYKSLSLMKRFEMVYGLPKISQS-QGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain