SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50238

Length: 478 nt

UniGene Fasta

>sp_v1.1_unigene50238
ATGGGCATTTCTCCATTTTCTGGAATGGTGGTAAAGGGACAAATAATAAGGCAGAGGCCATGGCCCTACATGGTCTGCTCATCTTATGTTCTTTCATGGATATTGGACCTATAAATGTATATGGGGACTCGAAAATTATCATTGATCATGTGAATGGTAAGTTGAAAATATCAAATGACAACCTTTCAGGATGGCTGAATAGGATTGCATCTTTATGGAAGTCTGCTACATTTCCTATTGTGCATACAAAGCAAAATCAAAATGTACATGCGAATGCCTTATCAAAGAAAGGGATGCATGCTCCAATCGGTATATAGCATCTGTCATCACTATGGATTCCTGCTCATGTTGATTCAGTCGTTCTCTATGCCCGGCATATAATGCTTGCAGTTTTCTGTTTTCTATAAGGCCTATATTTTCGGATATATCTATCTCCTACAGTCCTCCGAATATCTGGATAGTCCTAAATTTTGCTATG

Ace file of the UniGene sp_v1.1_unigene50238

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribonuclease H domain	IPR002156	-	0.0	-
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A901

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 31 aas, your sequence is shorter than subject: 105 - 242

Fln protein: GHFSIFWNGGKGTNNKAEAMALHGLLILCSFMDIGPINVYGDSKIIIDHVNGKLKISNDNLSGWLNRIASLWKSATFPIVHTKQNQNVHANALSKKGMHAPIGI*

Protein Length: 106

Fln nts: ATGGGCATTTCTCCATTTTCTGGAATGGTGGTAAAGGGACAAATAATAAGGCAGAGGCCATGGCCCTACATGGTCTGCTCATCTTATGTTCTTTCATGGATATTGGACCTATAAATGTATATGGGGACTCGAAAATTATCATTGATCATGTGAATGGTAAGTTGAAAATATCAAATGACAACCTTTCAGGATGGCTGAATAGGATTGCATCTTTATGGAAGTCTGCTACATTTCCTATTGTGCATACAAAGCAAAATCAAAATGTACATGCGAATGCCTTATCAAAGAAAGGGATGCATGCTCCAATCGGTATATAGCATCTGTCATCACTATGGATTCCTGCTCATGTTGATTCAGTCGTTCTCTATGCCCGGCATATAATGCTTGCAGTTTTCTGTTTTCTATAAGGCCTATATTTTCGGATATATCTATCTCCTACAGTCCTCCGAATATCTGGATAGTCCTAAATTTTGCTATG

Fln Alignment:

sp_v1.1_unigene50238___GGKGTNNKAEAMALHGLLILCSFMDIGPINVYGDSKIIIDHVNGKLKISNDNLSGWLNRIAS-LWKSATFPIVHTKQNQNVHANALSKKGMHAPI
D5A901_______________GYKLTNNVAEYKALIAGLQHALDHGITSIQAYGDSELICKQVNGQYRVANRRLARYYNTVCQLLGKFESHEVLHVPRDENCAADDLANDGIDRPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain