SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50234

Length: 494 nt

UniGene Fasta

>sp_v1.1_unigene50234
ATGGGGGCTGCTCCGGCTGCTGCTGCTCCTGTTTCTACGCGTCCGAAATTCTTTTAAATTACACCCTTCCCTAGTCTCTCATAGCTGAGTTTTGAGCTGTGAGTTTTACCGGACAAAGGTCGGAGTTCAGACAAACCCATGACTTCGACAATGGAGGAGCAGAAGCCGCGGAGGCAGCTGAGCGTCCGCAAGAAGCACAGGTCGACGGCCCGGCGGGGCGACACGTTGCTCCACTCGGCCGCCAGGGCGGGCGATTTATCTAAACTCCGGCAAATTCTTGCGCCCGATTCCGACAATGAGGAGTCCGACGTCGAGAACCCCATCGACTCGCGAGATTTAATTGCCCGACAGAACGAAGCGGGGGAGACGACATTATACGCCGCCGCGGACAGTGGCCACGCGGAAATCTTGAAGGAGTTGCTCAATTACGCCTTCGATTTTGTGTCCGTCAAAACCAACACCGGCAGCGACGCCCTGCACACCGCGGCAAAGCC

Ace file of the UniGene sp_v1.1_unigene50234

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ankyrin repeat-containing protein, putative	-	-	1.0e-13	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	ankyrin repeat-containing	-	-	2.94745e-13	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.94745e-13	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat	IPR002110	-	2.94745e-13	57%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	2.94745e-13	57%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL37

Fln msg: Distance to subject end: 419 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 118 - 584

Fln protein: MTSTMEEQKPRRQLSVRKKHRSTARRGDTLLHSAARAGDLSKLRQILAPDSDNEESDVENPIDSRDLIARQNEAGETTLYAAADSGHAEILKELLNYAFDFVSVKTNTGSDALHTAAK

Protein Length: 119

Fln nts: ATGGGGGCTGCTCCGGCTGCTGCTGCTCCTGTTTCTACGCGTCCGAAATTCTTTTAAATTACACCCTTCCCTAGTCTCTCATAGCTGAGTTTTGAGCTGTGAGTTTTACCGGACAAAGGTCGGAGTTCAGACAAACCC_-_ATGACTTCGACAATGGAGGAGCAGAAGCCGCGGAGGCAGCTGAGCGTCCGCAAGAAGCACAGGTCGACGGCCCGGCGGGGCGACACGTTGCTCCACTCGGCCGCCAGGGCGGGCGATTTATCTAAACTCCGGCAAATTCTTGCGCCCGATTCCGACAATGAGGAGTCCGACGTCGAGAACCCCATCGACTCGCGAGATTTAATTGCCCGACAGAACGAAGCGGGGGAGACGACATTATACGCCGCCGCGGACAGTGGCCACGCGGAAATCTTGAAGGAGTTGCTCAATTACGCCTTCGATTTTGTGTCCGTCAAAACCAACACCGGCAGCGACGCCCTGCACACCGCGGCAAAGCC

Fln Alignment:

sp_v1.1_unigene50234___TARRGDTLLHSAARAGDLSKLRQILAPDSDNEESDVENPIDSRD-------LIARQNEAGETTLYAAADSGHAEILKELLNYAFDFVSVKTN-TGSDALHTAAK
B8LL37_______________TGRYNDTDLHLAAKKGDLEAVKKIL--DGLHSENGVQNPQADIEMGEIRSCLVDEENELFETPLYIAAEQGHLDVLKELLKFAHPETLVKKNHTGYDVFHIAAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain