SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50148

Length: 501 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene50148
ATGGGGGAGTTCATTGAGGATAGTGGCTGCTCTGTTGCCATGAGACTGCAGGGCATATATAAAGCCTTGGCAATGGCTACTAGAACCAGCACAACTTGGCACTGGTATTAAAACATTGAAGACTTTTGGATATGGGGGCTGCAGCTTTGTATGTAAATGTTGCAGTGCTGGTGGGATTTTGTTGTTGTGGAGTTGTGGCGCAGCTGAGTAGAGACTTTTACATGAATACTTGTCCCAATGTAGAGAGAATCGTGAGAAATGTGGTGGCTCAAAAGTTGACAGAAGCTCCCACTTCGGCTCCCGGGGCCCTCAGACTCTTCTTCCATGATTGCTTTGTGGAGGGGTNTGATGCTGTGCTTATTGCGTCCAGTGAGGATAATGTAGCGGAGAAAGATGCAGACATCAACCTATCGTTGCCAGGAGATGGATTTGATGTTTTCATTCGAGCAAAGAGAGCGTTGGAATCACAGTGCCCAAATGTGGTGTCTTGTGCTGATGTTA

Ace file of the UniGene sp_v1.1_unigene50148

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase, putative; K00430 peroxidase [EC:1.11.1.7]	-	-	1.0e-28	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	at5g14130 mua22_13	-	-	1.43264e-36	76%

Source	ECs	Term	Type	e value	Identity
AutoFact	Peroxidase.	EC:1.11.1.7	-	1.0e-28	60%

Source	KEGGs	Term	e value	Identity
AutoFact	Phenylalanine metabolism	00360	1.0e-28	60%
AutoFact	Methane metabolism	00680	1.0e-28	60%
AutoFact	Phenylpropanoid biosynthesis	00940	1.0e-28	60%
AutoFact	Biosynthesis of phenylpropanoids	01061	1.0e-28	60%
AutoFact	Metabolic pathways	01100	1.0e-28	60%
AutoFact	Biosynthesis of secondary metabolites	01110	1.0e-28	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant peroxidase	IPR000823	-	1.43264e-36	76%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	1.43264e-36	76%
Blast2go	Haem peroxidase	IPR010255	-	1.43264e-36	76%
Blast2go	Peroxidase, active site	IPR019794	-	1.43264e-36	76%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMN9

Fln msg: Distance to subject end: 201 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 123 - 333

Fln protein: MGAAALYVNVAVLVGFCCCGVVAQLSRDFYMNTCPNVERIVRNVVAQKLTEAPTSAPGALRLFFHDCFVEGYDAVLIASSEDNVAEKDADINLSLPGDGFDVFIRAKRALESQCPNVVSCADV

Protein Length: 124

Fln nts: ATGGGGGAGTTCATTGAGGATAGTGGCTGCTCTGTTGCCATGAGACTGCAGGGCATATATAAAGCCTTGGCAATGGCTACTAGAACCAGCACAACTTGGCACTGGTATTAAAACATTGAAGACTTTTGGAT_-_ATGGGGGCTGCAGCTTTGTATGTAAATGTTGCAGTGCTGGTGGGATTTTGTTGTTGTGGAGTTGTGGCGCAGCTGAGTAGAGACTTTTACATGAATACTTGTCCCAATGTAGAGAGAATCGTGAGAAATGTGGTGGCTCAAAAGTTGACAGAAGCTCCCACTTCGGCTCCCGGGGCCCTCAGACTCTTCTTCCATGATTGCTTTGTGGAGGGGTaTGATGCTGTGCTTATTGCGTCCAGTGAGGATAATGTAGCGGAGAAAGATGCAGACATCAACCTATCGTTGCCAGGAGATGGATTTGATGTTTTCATTCGAGCAAAGAGAGCGTTGGAATCACAGTGCCCAAATGTGGTGTCTTGTGCTGATGTTA

Fln Alignment:

sp_v1.1_unigene50148___GFCCCGVVAQLSRDFYMNTCPNVERIVRNVVAQKLTEAPTSAPGALRLFFHDCFVEGYDA-VLIASSEDNVAEKDADINLSLPGDGFDVFIRAKRALESQCPNVVSCADV
A9NMN9_______________GLCVSKGSAQLKENFYAKICPNVESIVRNAVSQKFSQTFVTVPGTLRLFFHDCFVEGCDASVIIQSTSNNTAEKDFSDNLSLAGDGFDTVVKAKQAVEKVCPNTVSCADI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain