SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene50080

Length: 298 nt

UniGene Fasta

>sp_v1.1_unigene50080
AATGAGCGAGGCCATGGAGCTTTTGGACGAGATGGGGAAAGTTGGTAAGCCTCTCCTAATTTGGTGACTTATGGGATATTAATTGAAGGTCTCTGTGATGCTGCACGGTTTCACGATGCGCAAAAAACTCATATATGATATGCCTTATAGAGGCTGTAAACCAACTGTAGTCACTTATAGTGTGTTGGTGACTGGCCTCTGCAAGTATGGAAAGATGGATGAAGCCATGAGTCTTTTGGGTCAGATGAAGGATAAAGGTTTCAGGCCTGATGCTGTTGTCTATAATATATTTGTTAAG

Ace file of the UniGene sp_v1.1_unigene50080

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SYN1_RICCO	-	-	7.0e-14	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	pentatricopeptide repeat-containing protein	-	-	5.31816e-15	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	5.31816e-15	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 216 aas, your sequence is shorter than subject: 99 - 420

Fln protein: MSEAMELLDEMGKVGKPLLIW*LMGY*LKVSVMLHGFTMRKKLIYDMPYRGCKPTVVTYSVLVTGLCKYGKMDEAMSLLGQMKDKGFRPDAVVYNIFVK

Protein Length: 100

Fln nts: AATGAGCGAGGCCATGGAGCTTTTGGACGAGATGGGGAAAGTTGGTAAGCCTCTCCTAATTTGGTGACTTATGGGATATTAATTGAAGGTCTCTGTGATGCTGCACGGTTTCACGATGCGCAAAAAACTCATATATGATATGCCTTATAGAGGCTGTAAACCAACTGTAGTCACTTATAGTGTGTTGGTGACTGGCCTCTGCAAGTATGGAAAGATGGATGAAGCCATGAGTCTTTTGGGTCAGATGAAGGATAAAGGTTTCAGGCCTGATGCTGTTGTCTATAATATATTTGTTAAG

Fln Alignment:

sp_v1.1_unigene50080___MSEAMELLDEMGKVGKPLLIW*LMGY*LKVSVMLHGFT------MRKKLIYDMPYRGCKPTVVTYSVLVTGLCKYGKMDEAMSLLGQMKDKGFRPDAVVYNIFVK
B8LN20_______________IAEAMEIFREMEEKGSAPDSF-------TYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain