SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49962

Length: 509 nt

UniGene Fasta

>sp_v1.1_unigene49962
CAGAGATGCTACTATTTCACGGTGTTGTATGCCGCCGGAGTGGTTAATGAATTTGGGCCCAAGAGTCCAAATACCGCTGAGTGTATTCTTCGCCTGCCCTTTGTCCAAACTGCCTCACAGGGCCGAGTTGTAATTTACGGTTTACTCGGCGCTTTGACAGTCGTCCTGATCTGCGCTTTTGGGCTTCTCTATTGTTTGTGGGTGAAGAGGAGGAATCGCAAGGTTTTCCACAGGGGATTCGTGATGCGGAATGAAAAACTTCTGAAATCCGCCGTGAAACCCAACACCGGGGCAGTGTGGTTCGGGATTCGGGAGATCAAGATTGCCACCGATAATTTCAGTGACCTGAATCTCATCGGTCAAGGGGGATTCGGTACAGTTTACAAAGGAACGCTTGATAACGGTCGGCGGATCGCGGTGAAGAGAATCAGAAACTGCAGTCCGGAAGGGGATTCCGAATTCCTGAACGAGGTGGAGATCATCAACAACACGAGGCACATGAATCTGGT

Ace file of the UniGene sp_v1.1_unigene49962

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinase, putative (EC:2.7.11.30)	-	-	1.0e-31	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	3.70968e-35	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	3.70968e-35	60%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	3.70968e-35	60%
Blast2go	Protein kinase-like domain	IPR011009	-	3.70968e-35	60%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	3.70968e-35	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPC1

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 169 - 611

Fln protein: QRCYYFTVLYAAGVVNEFGPKSPNTAECILRLPFVQTASQGRVVIYGLLGALTVVLICAFGLLYCLWVKRRNRKVFHRGFVMRNEKLLKSAVKPNTGAVWFGIREIKIATDNFSDLNLIGQGGFGTVYKGTLDNGRRIAVKRIRNCSPEGDSEFLNEVEIINNTRHMNL

Protein Length: 170

Fln nts: CAGAGATGCTACTATTTCACGGTGTTGTATGCCGCCGGAGTGGTTAATGAATTTGGGCCCAAGAGTCCAAATACCGCTGAGTGTATTCTTCGCCTGCCCTTTGTCCAAACTGCCTCACAGGGCCGAGTTGTAATTTACGGTTTACTCGGCGCTTTGACAGTCGTCCTGATCTGCGCTTTTGGGCTTCTCTATTGTTTGTGGGTGAAGAGGAGGAATCGCAAGGTTTTCCACAGGGGATTCGTGATGCGGAATGAAAAACTTCTGAAATCCGCCGTGAAACCCAACACCGGGGCAGTGTGGTTCGGGATTCGGGAGATCAAGATTGCCACCGATAATTTCAGTGACCTGAATCTCATCGGTCAAGGGGGATTCGGTACAGTTTACAAAGGAACGCTTGATAACGGTCGGCGGATCGCGGTGAAGAGAATCAGAAACTGCAGTCCGGAAGGGGATTCCGAATTCCTGAACGAGGTGGAGATCATCAACAACACGAGGCACATGAATCTGGT

Fln Alignment:

sp_v1.1_unigene49962___CYYFTVLYAAGVVNEFGPKSPNTAECILRLPFVQTASQGRVVIYGLL--GALTVVLICAFGLLYCLWVKRRNRKVFHRGFVMRNEKLLKSAVKPNTGAVWFGIREIKIATDNFSDLNLIGQGGFGTVYKGTLDNGRRIAVKRIRNCSPEGDSEFLNEVEIINNTRHMNL
B8LPC1_______________CSAYSSIYAAAILNKAGPTDKNTAWCLFFIGLNLSSGKNSAWIYGAVAAGVSVCVLGAVVGFLYC---RRRRARMEKKKVLAEFEASDPCSMNPNSTLVRFTIEDIRAATKNFARENIVGTGGFGNVYKGVLADGSLVAVKRFKNCSPAGDPEFVHEVDVISSIRHRNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain