SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49872

Length: 444 nt

UniGene Fasta

>sp_v1.1_unigene49872
GCTAGGGGCTTCTCTCAACAAGAAGGCATCGATTGTGAAGTAGACATTTGCTCCAACAACAACGTATACAACTATTCGATCATTAGTCTCTTTGGCAGCATCGATGGGACGGAATATACATCAAATGGATGTTAAGGTTGCATTCTTGAATGGCACAATTGATGAGGAAGTCTATATAGAACAACCCTTGGGAATTGAAGTTAAAGACAGCAAGACATATGTTTGTAGATTGAAGAAAGCATTATATGGCCTCAAGCAAGCACCAAGGGCATGGTATGATAGGATGGATGCGTACCTTCAGAGATCAGGATTCACAAAGAGTTCTACTGATCCGAACCTTTATATTAAGGTTGTGAAGGGTGAACCATAATCATTCTTTTGTATGTGGATGATCTTCTCTTGACAGGTGTAAGGTCGAAATGAAGAATGCAAGAAGCAACTAGC

Ace file of the UniGene sp_v1.1_unigene49872

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q4JQ43_GINBI	-	-	3.0e-28	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	reverse transcriptase	-	-	5.1683e-28	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	5.1683e-28	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 165 aas, your sequence is shorter than subject: 123 - 363

Fln protein: LGASLNKKASIVK*TFAPTTTYTTIRSLVSLAASMGRNIHQMDVKVAFLNGTIDEEVYIEQPLGIEVKDSKTYVCRLKKALYGLKQAPRAWYDRMDAYLQRSGFTKSSTDPNLYIKVVKGEP*

Protein Length: 124

Fln nts: GCTAGGGGCTTCTCTCAACAAGAAGGCATCGATTGTGAAGTAGACATTTGCTCCAACAACAACGTATACAACTATTCGATCATTAGTCTCTTTGGCAGCATCGATGGGACGGAATATACATCAAATGGATGTTAAGGTTGCATTCTTGAATGGCACAATTGATGAGGAAGTCTATATAGAACAACCCTTGGGAATTGAAGTTAAAGACAGCAAGACATATGTTTGTAGATTGAAGAAAGCATTATATGGCCTCAAGCAAGCACCAAGGGCATGGTATGATAGGATGGATGCGTACCTTCAGAGATCAGGATTCACAAAGAGTTCTACTGATCCGAACCTTTATATTAAGGTTGTGAAGGGTGAACCATAATCATTCTTTTGTATGTGGATGATCTTCTCTTGACAGGTGTAAGGTCGAAATGAAGAATGCAAGAAGCAACTAGC

Fln Alignment:

sp_v1.1_unigene49872___IRSLVSLAASMGRNIHQMDVKVAFLNGTIDEEVYIEQPLGIEVKDSKTYVCRLKKALYGLKQAPRAWYDRMDAYLQRSGFTKSSTDPNLYIKV
B8LKV8_______________IRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain