SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49871

Length: 531 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene49871
CGTCGTGACCTTGGATGTCACTCAACTCAGCACTCTAGTGGACATGTATGACAAGTGCAGGAGTTTGAAAGATGCGCGCAAAGTATTTGACGAAAGTCTGAACGAACTATCTTCTCATGGACCATGATGATTGGAGCTTATAGCAGACATGGGTTTGCGGACGAGGCATTGAAATTGTATCATCAGATGCTCTCTACAGGTATGGAGCCCGATGGATTCCTATTCGCCACAGTTTTGCGGGCTTATGGCAAGCTTTCGGCGCTAGAACAGGGTAAGGAGATGCACGAGGAGATTATCAAAAGAGGGTTTGAGCGTGATATCGTTGTGGGGAACACTCTTGTAGTTATGTATGCAAACTGTGGGAATTTGGAGAAGGCACGTGACGTGTTTGACAGAGTGTGGCAGCCAAATGCTGTCTCTTGGACTGCGATGATTGGAGGCTATGCAGAGAATGGGCTTGTTGATCAAGCCTTCGAGTTCTTTCGGAAGATGCAAGCTGTGGGTGTGAAGCCAGACTCAAAGACATTTGCC

Ace file of the UniGene sp_v1.1_unigene49871 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	9.0e-31	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	protein	-	-	6.05597e-35	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	6.05597e-35	63%
Blast2go	growth	GO:0040007	Biological Process	6.05597e-35	63%
Blast2go	response to light stimulus	GO:0009416	Biological Process	6.05597e-35	63%
Blast2go	RNA modification	GO:0009451	Biological Process	6.05597e-35	63%
Blast2go	chloroplast	GO:0009507	Cellular Component	6.05597e-35	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	6.05597e-35	63%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	6.05597e-35	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Separated hits, possible frame ERROR between 91 and 100, Distance to subject end: 151 aas, your sequence is shorter than subject: 177 - 644

Fln protein: VVTLDVTQLSTLVDMYDKCRSLKDARKVFxxxxERTIFSWTMMIGAYSRHGFADEALKLYHQMLSTGMEPDGFLFATVLRAYGKLSALEQGKEMHEEIIKRGFERDIVVGNTLVVMYANCGNLEKARDVFDRVWQPNAVSWTAMIGGYAENGLVDQAFEFFRKMQAVGVKPDSKTFA

Protein Length: 178

Fln nts: CGTCGTGACCTTGGATGTCACTCAACTCAGCACTCTAGTGGACATGTATGACAAGTGCAGGAGTTTGAAAGATGCGCGCAAAGTATTTGAxxxxxxxxxTGAACGAACTATCTTCTCATGGACCATGATGATTGGAGCTTATAGCAGACATGGGTTTGCGGACGAGGCATTGAAATTGTATCATCAGATGCTCTCTACAGGTATGGAGCCCGATGGATTCCTATTCGCCACAGTTTTGCGGGCTTATGGCAAGCTTTCGGCGCTAGAACAGGGTAAGGAGATGCACGAGGAGATTATCAAAAGAGGGTTTGAGCGTGATATCGTTGTGGGGAACACTCTTGTAGTTATGTATGCAAACTGTGGGAATTTGGAGAAGGCACGTGACGTGTTTGACAGAGTGTGGCAGCCAAATGCTGTCTCTTGGACTGCGATGATTGGAGGCTATGCAGAGAATGGGCTTGTTGATCAAGCCTTCGAGTTCTTTCGGAAGATGCAAGCTGTGGGTGTGAAGCCAGACTCAAAGACATTTGCC

Fln Alignment:

sp_v1.1_unigene49871___DVTQLSTLVDMYDKCRSLKDARKVFDxxxERTIFSWTMMIGAYSRHGFADEALKLYHQMLSTGMEPDGFLFATVLRAYGKLSALEQGKEMHEEIIKRGFERDIVVGNTLVVMYANCGNLEKARDVFDRVWQPNAVSWTAMIGGYAENGLVDQAFEFFRKMQAVGVKPDSKTF
B8LLJ0_______________DVLVGNTLVGMYAKCGSIEDARKVFDxxxECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain