SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49837

Length: 368 nt

UniGene Fasta

>sp_v1.1_unigene49837
ACCACATCGTCGTGAAGATGAAAAGTCTAATTTGGAAGCGCAAAGGATAAAGGAGGGTAAATGCAAGCGTTGTGGTGAAAAGTGGGATCCCAAACATAGATGTGTTAAAGGAAAGGAACCAAAGAACCTATATAATTGCGAAGCAACCAATGATTCAAATAGTGAAGAGTCTGATATTGAAGAAACATGAAGAAGTATTTCAAGATCTACCTCTAAAGATGCCGCCTAATAGGGAAATTGAGCATGGGATAGAAGTCAAGGCAGGATCAGACCTGGTTAACATCAAGCCATACCGATATCCACATCACCAAAAAACAGAAATCGAGAAATTAATCCAAGACCTCTTAAGGTGTGGAATCATCTCGAAA

Ace file of the UniGene sp_v1.1_unigene49837

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR	-	-	3.0e-11	50%
FL-Next	tr=Putative uncharacterized protein; Lotus japonicus.	-	-	0.0	42%
Blast2go	rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold	-	-	9.10577e-14	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B5U9W2

Fln msg: Separated hits, possible frame ERROR between 103 and 174, Distance to subject end: 902 aas, your sequence is shorter than subject: 123 - 1369

Fln protein: PHRREDEKSNLEAQRIKEGKCKRCGEKWDPKHRxxxxxxxxxxxxxxxxxxxxxxxxxILKKHEEVFQDLPLKMPPNREIEHGIEVKAGSDLVNIKPYRYPHHQKTEIEKLIQDLLRCGIISK

Protein Length: 124

Fln nts: ACCACATCGTCGTGAAGATGAAAAGTCTAATTTGGAAGCGCAAAGGATAAAGGAGGGTAAATGCAAGCGTTGTGGTGAAAAGTGGGATCCCAAACATAGATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATATTGAAGAAACATGAAGAAGTATTTCAAGATCTACCTCTAAAGATGCCGCCTAATAGGGAAATTGAGCATGGGATAGAAGTCAAGGCAGGATCAGACCTGGTTAACATCAAGCCATACCGATATCCACATCACCAAAAAACAGAAATCGAGAAATTAATCCAAGACCTCTTAAGGTGTGGAATCATCTCGAAA

Fln Alignment:

sp_v1.1_unigene49837___QRIKEGKCKRCGEKWDPKHRCxxxxxxxxxxxxxxxxxxxxxxxxILKKHEEVFQDLPLKMPPNREIEHGIEVKAGSDLVNIKPYRYPHHQKTEIEKLIQDLLRCGII
B5U9W2_______________ERSRKGLCFKCGDKWGKEHICxxxxxxxxxxxxxxxxxxxxxxxxILEEYPEVFQE-PKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain