SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49777

Length: 481 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene49777
CGTCGTGACCTTGGCTGTCACTCAAGTTTTCTCCCTGGTAATTTGGCTTCCGCACTAATCCCTCCCTTAATAGCCCCAGTAAAATCAATTGTAATTTCATCTCTGGGGTGGGGAGATGGCTGTTCAATTTAAGTTCAGAAGCGCGGTGGAGTTTAATTCGGTGGGAGTTGAAGGACCCTTCATATCTGTAGGCGATCTGAAGCGAAAGATTGCAGAGCACAAGAATTTGAGCAAATGCAAGGATTTCGATCTCCTCATCACCGATGCTCAAACCGGGGAAGAGTATTACGACGAAAGCATCCTGATACGGACGAATACAAGCGTGATCATAAAAAGAGTTCCAGTTGCACGACCCAAGTCAGCTGTTGTGTTGTCTGATGTTGATTCAGTCATTAAAGCTTCATCAAGCAAAAACACAGACAAAGATGATATATTGAAATCTCCATTATCACCTAATGCAGACATTGATGGCTTTGGTGAC

Ace file of the UniGene sp_v1.1_unigene49777

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc ion binding	-	-	2.0e-19	41%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	59%
Blast2go	protein	-	-	5.65574e-25	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DWNN domain	IPR014891	-	5.65574e-25	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9T0S6

Fln msg: Distance to subject end: 133 aas, your sequence is shorter than subject: 122 - 255

Fln protein: MAVQFKFRSAVEFNSVGVEGPFISVGDLKRKIAEHKNLSKCKDFDLLITDAQTGEEYYDESILIRTNTSVIIKRVPVARPKSAVVLSDVDSVIKASSSKNTDKDDILKSPLSPNADIDGFGD

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTCTCCCTGGTAATTTGGCTTCCGCACTAATCCCTCCCTTAATAGCCCCAGTAAAATCAATTGTAATTTCATCTCTGGGGTGGGGAG_-_ATGGCTGTTCAATTTAAGTTCAGAAGCGCGGTGGAGTTTAATTCGGTGGGAGTTGAAGGACCCTTCATATCTGTAGGCGATCTGAAGCGAAAGATTGCAGAGCACAAGAATTTGAGCAAATGCAAGGATTTCGATCTCCTCATCACCGATGCTCAAACCGGGGAAGAGTATTACGACGAAAGCATCCTGATACGGACGAATACAAGCGTGATCATAAAAAGAGTTCCAGTTGCACGACCCAAGTCAGCTGTTGTGTTGTCTGATGTTGATTCAGTCATTAAAGCTTCATCAAGCAAAAACACAGACAAAGATGATATATTGAAATCTCCATTATCACCTAATGCAGACATTGATGGCTTTGGTGAC

Fln Alignment:

sp_v1.1_unigene49777___MAVQFKFRSAVEFNSVGVEGPFISVGDLKRKIAEHKNLSKCKDFDLLITDAQTGEEYYDESILIRTNTSVIIKRVPVARPKSAVVLSDVDSVIK
A9T0S6_______________MAIHFKFRSAVEYDSIDIDGPFISIGSLKEKIVEHKNLGRATDFDLLITNAQTAEEYSDESFLLPKNTSVIIKRVPASRSKPVLRVEEQSQSLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain