SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49770

Length: 278 nt

UniGene Fasta

>sp_v1.1_unigene49770
CACGCCAAGTGTTTGATGAAATGTCTCAAAGAGATGTGATCTCGTGGACTGCGATGATTGCTGGCTATGGCAAGCATGGGTATGCATCTCATGCCATTGAATTGTTTGAACTCATGATCTTAAATGCCATGGCGCCGAATCCCGTCACGTTTGTTGGCATTTTGTCTGCATGCAGTCATGCCGGTCTAGTGGAGGAAGGCAAGAAATACTTTGATTCCATGAGTCACGATTATTTCATCAACCCGGCAATGGATCACTATGCCTGTATGGTTGATCTG

Ace file of the UniGene sp_v1.1_unigene49770

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRR2; CRR2 (CHLORORESPIRATORY REDUCTION 2)	-	-	2.0e-26	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	pentatricopeptide repeat-containing protein	-	-	7.92433e-27	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast RNA processing	GO:0031425	Biological Process	7.92433e-27	75%
Blast2go	polycistronic mRNA processing	GO:0031426	Biological Process	7.92433e-27	75%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	7.92433e-27	75%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	7.92433e-27	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	7.92433e-27	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 92 - 232

Fln protein: RQVFDEMSQRDVISWTAMIAGYGKHGYASHAIELFELMILNAMAPNPVTFVGILSACSHAGLVEEGKKYFDSMSHDYFINPAMDHYACMVDL

Protein Length: 93

Fln nts: CACGCCAAGTGTTTGATGAAATGTCTCAAAGAGATGTGATCTCGTGGACTGCGATGATTGCTGGCTATGGCAAGCATGGGTATGCATCTCATGCCATTGAATTGTTTGAACTCATGATCTTAAATGCCATGGCGCCGAATCCCGTCACGTTTGTTGGCATTTTGTCTGCATGCAGTCATGCCGGTCTAGTGGAGGAAGGCAAGAAATACTTTGATTCCATGAGTCACGATTATTTCATCAACCCGGCAATGGATCACTATGCCTGTATGGTTGATCTG

Fln Alignment:

sp_v1.1_unigene49770___QVFDEMSQRDVISWTAMIAGYGKHGYASHAIELFELMILNAMAPNPVTFVGILSACSHAGLVEEGKKYFDSMSHDYFINPAMDHYACMVDL
D5AB53_______________KVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain