SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49671

Length: 1066 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene49671 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase n=1 Tax=Populus trichocarpa RepID=B9IC41_POPTR	-	-	85%
FL-Next	sp=Alpha-1,4-galacturonosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	84%
Blast2go	glycosyl transferase family 8	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	95%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	homogalacturonan biosynthetic process	GO:0010289	Biological Process	95%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	95%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	95%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LE59

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 318 - 673

Fln protein: SV*FIFIGKNALS*SGSITMKCRLLTIFK*DPHYNEV*PSCSISERSLSLRTH*TCIYVI*ALAGNYHHPQLTIEPRPHGLASPT*IRTLKDNHFKADHPTTLSTGSSNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGAVETCGESFHRFDKYLNFSNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGYNPSVDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPFLQQCNINE*

Protein Length: 319

Fln nts: CAGCGTTTAATTTATCTTTATCGGCAAGAATGCCCTTTCTTAATCTGGTAGTATTACAATGAAATGCAGACTTCTTACAATATTTAAGTAAGATCCCCATTACAATGAAGTGTAGCCGTCTTGTAGTATTTCAGAAAGATCCCTTTCATTGAGAACCCACTGAACATGTATTTATGTGATCTGAGCCTTGGCCGGGAATTATCACCACCCCCAGTTAACCATTGAACCAAGACCCCATGGACTTGCTTCACCAACTTGAATCCGCACCTTGAAAGACAATCATTTCAAGGCAGATCACCCGACTACACTCTCAACAGGTTCCTCCAATTTGAAATATAGAAATCCAAAATATTTATCCATGCTAAATCATCTTCGTTTCTATCTTCCACAAGTTTATCCCAAACTGGACAAGATCCTTTTCTTGGATGATGATATTGTGGTGCAGAAAGATTTGACGCCCTTGTGGTCAGTAGATCTTCATGGAAAGGTTAATGGTGCAGTGGAAACTTGTGGAGAAAGCTTTCACCGGTTTGACAAATACCTTAATTTTTCCAATCCGCACATAGCCAGGCACTTTGATCCTAATGCTTGTGGTTGGGCATATGGGATGAATGTATTTGATCTCAAAGAATGGAAAAAACAAGATATAACTGGAATATATCACAAGTGGCAGAACATGAATGAGGATAGAGTGTTGTGGAAGCTTGGAACACTACCCCCTGGATTGATCACGTTTTATGGCTTGACCCATCCTTTGGACAAGTCCTGGCATGTGCTGGGTTTAGGATATAATCCTAGCGTGGACCGTTCAGAGATTGACAATGCAGCTGTTGTTCATTACAATGGGAACATGAAACCTTGGTTAGAGCTGGCAATGACGAAGTACAGGCCTTACTGGACAAAATATATAAAATATGATCATCCTTTCTTACAACAGTGCAATATAAATGAATAG___TTGTGACCTTAATATTCATACCACAGCAGATTGTCAGATGTAAAGTGTAAAGGCCCTTGATTCTGGAAGTCTTGTCTGTCTCTATTCATTTTGATAATTCATTCTGATTCA

Fln Alignment:

sp_v1.1_unigene49671___LKDNHFKADHPTTLSTGSSNLKYRNPKYLSMLNHLRFYLPQVYPXXXXXXXXXXXIVVQKDLTPLWSVDLHGKVNGAVETCGESFHRFDKYLNFSNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGYNPSVDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPFLQQCNINE
Q9LE59_______________MREYYFKADHPTS---GSSNLKYRNPKYLSMLNHLRFYLPEVYPKLNKILFLDDDIIVQKDLTPLWEVNLNGKVNGAVETCGESFHRFDKYLNFSNPHIARNFNPNACGWAYGMNMFDLKEWKKRDITGIYHKWQNMNENRTLWKLGTLPPGLITFYGLTHPLNKAWHVLGLGYNPSIDKKDIENAAVVHYNGNMKPWLELAMSKYRPYWTKYIKFDHPYLRRCNLHE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
857		33		66	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain