SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49617

Length: 418 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene49617
ATGAAGCTTAGACAACGGAGTCGTGATGGAGAGCATGTAGTTCGCCTTTCTTATCTTGAGGTCTATAATGAAATGGTCAGAGATTTGCTCTCTCCTGGCAGGCCTCTTGTTCTGAGAGAAGATAAGCAGGGGATTGTGGCAGCTGGGCTCACTCAATATCAGGCATTCTCTACGGATGAGGTCATGGCACTGCTTCAACGAGGTAACCAGAATAGAACCACTGAACCCACTCGAATGAATGAGACTTCATCTAGATCTCATGCTATCTTGCAGGTTGTAGCAGAGTACAAAGTGAAGGAGGGTTCTAATATTGTTACCCGTGTTGGAAAGTTATCTCTAATAGATTTGGCTGGTTCTGAAAGAGCTTTAGCAACAGATCTCCGAACAGTCAGATCATTTGAAGGAGCCAACATAAACC

Ace file of the UniGene sp_v1.1_unigene49617 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding / microtubule motor	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	chromosome-associated kinesin	-	-	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kinesin, motor domain	IPR001752	-	0.0	84%
Blast2go	Kinesin, motor region, conserved site	IPR019821	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Distance to subject end: 353 aas, atg_distance in limit (1-15): atg_distance = 15, No stop codon before M and low homology subject, your sequence is shorter than subject: 139 - 509

Fln protein: MKLRQRSRDGEHVVRLSYLEVYNEMVRDLLSPGRPLVLREDKQGIVAAGLTQYQAFSTDEVMALLQRGNQNRTTEPTRMNETSSRSHAILQVVAEYKVKEGSNIVTRVGKLSLIDLAGSERALATDLRTVRSFEGANIN

Protein Length: 140

Fln nts: _-_ATGAAGCTTAGACAACGGAGTCGTGATGGAGAGCATGTAGTTCGCCTTTCTTATCTTGAGGTCTATAATGAAATGGTCAGAGATTTGCTCTCTCCTGGCAGGCCTCTTGTTCTGAGAGAAGATAAGCAGGGGATTGTGGCAGCTGGGCTCACTCAATATCAGGCATTCTCTACGGATGAGGTCATGGCACTGCTTCAACGAGGTAACCAGAATAGAACCACTGAACCCACTCGAATGAATGAGACTTCATCTAGATCTCATGCTATCTTGCAGGTTGTAGCAGAGTACAAAGTGAAGGAGGGTTCTAATATTGTTACCCGTGTTGGAAAGTTATCTCTAATAGATTTGGCTGGTTCTGAAAGAGCTTTAGCAACAGATCTCCGAACAGTCAGATCATTTGAAGGAGCCAACATAAACC

Fln Alignment:

sp_v1.1_unigene49617___LSYLEVYNEMVRDLLSPGRPLVLRED-KQGIVAAGLTQYQAFSTDEVMALLQRGNQNRTTEPTRMNETSSRSHAILQVVAEYKVKEGSNIV--TRVGKLSLIDLAGSER-ALATDLRTVRSFEGANIN
D5ACB2_______________LSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIK-KHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain