SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49552

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene49552
TGCTCTTTTTCACCAATGGCATACACCAAGGTGCCTTGAAAATCAAGGGTGCCGAAGAAGAAATACAAATCCATGGCAATGGCAGAAGCAACAGACACGTACGAATCGACGTGAACGCAGAAGTGTCAGTTCTGTGCAAACATGGCCAGCTGAAGATGCGCTTGGAATTTTAAGTCATATGGATAATGAAGGCATTCGTGTACAGCCATCTACTTATACGTCTCTCTTGCAGGTGTGCCATAATGAGAAATCTGTAACACTGAGTAAATTGGTCCATGCCCACATGATTGAAACGGGATTTAAACCACACTTCTCTTCGGGCAACAGGCTTGTGAGCTTGTATGCCAAGTGGGGAGATCTGGCAGAGGCTCGCCGGGCTATGGACGAAATGCCCGAACGAAACGTGGTTTCGTGGACTACCATGATTGCAGCTTA

Ace file of the UniGene sp_v1.1_unigene49552 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	pentatricopeptide repeat-containing	-	-	1.22425e-19	58%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 182 aas, atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning, your sequence is shorter than subject: 144 - 644

Fln protein: ALFHQWHTPRCLENQGCRRRNTNPWQWQKQQTRTNRRERRSVSSVQTWPAEDALGILSHMDNEGIRVQPSTYTSLLQVCHNEKSVTLSKLVHAHMIETGFKPHFSSGNRLVSLYAKWGDLAEARRAMDEMPERNVVSWTTMIAA

Protein Length: 145

Fln nts: TGCTCTTTTTCACCAATGGCATACACCAAGGTGCCTTGAAAATCAAGGGTGCCGAAGAAGAAATACAAATCCATGGCAATGGCAGAAGCAACAGACACGTACGAATCGACGTGAACGCAGAAGTGTCAGTTCTGTGCAAACATGGCCAGCTGAAGATGCGCTTGGAATTTTAAGTCATATGGATAATGAAGGCATTCGTGTACAGCCATCTACTTATACGTCTCTCTTGCAGGTGTGCCATAATGAGAAATCTGTAACACTGAGTAAATTGGTCCATGCCCACATGATTGAAACGGGATTTAAACCACACTTCTCTTCGGGCAACAGGCTTGTGAGCTTGTATGCCAAGTGGGGAGATCTGGCAGAGGCTCGCCGGGCTATGGACGAAATGCCCGAACGAAACGTGGTTTCGTGGACTACCATGATTGCAGCTTA

Fln Alignment:

sp_v1.1_unigene49552___QTWPAEDALGILSHMDNEGIRVQPSTYTSLLQVCHNEKSVTLSKLVHAHMIETGFKPHFSSGNRLVSLYAKWGDLAEARRAMDEMPERNVVSWTTMI
B8LLJ0_______________QNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain