SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49540

Length: 409 nt

UniGene Fasta

>sp_v1.1_unigene49540
GATCAGTAAAAACGACGCCGTCAATGAAGCCGTCCACCGTTCCCGACTGGCACGAAGAGCCAGGAAATGACCGAGAGGAGGACGACTGGGTGGTGCTGCGGGTGGGAGGTCAGGTGTTCGAAACCTCGCGGAGGACACTGTGCGCGGACAAGGACTCCATGCTCGCTGCCCTGGTGCTCCGCCATTGGCCCAAAGATGAAAATAATAACCAGAATTCCGTCATCAGAATCGACAGAGACGGTCAGAGATTCGCGCACGTCTTGAATTATCTCCGCGGCGGCATTGCCTGTGTGCAGGACGTCGGTCTCCTGCGCGGATTGCAGGAAGAGGCCGATTTCTTCTGCCTCGCTGGCTTCAGCGCCCTCTGCGACGAGCAAATCCAGCGGATCGAGGAGGCAGAGGAAGCGAA

Ace file of the UniGene sp_v1.1_unigene49540

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kctd9; BTB/POZ domain-containing protein	-	-	1.0e-10	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	btb poz domain-containing protein	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Blast2go	BTB/POZ-like	IPR000210	-	65%
Blast2go	Potassium channel, voltage dependent, Kv, tetramerisation	IPR003131	-	65%
Blast2go	BTB/POZ fold	IPR011333	-	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZH3

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 128 - 193

Fln protein: MKPSTVPDWHEEPGNDREEDDWVVLRVGGQVFETSRRTLCADKDSMLAALVLRHWPKDENNNQNSVIRIDRDGQRFAHVLNYLRGGIACVQDVGLLRGLQEEADFFCLAGFSALCDEQIQRIEEAEEA

Protein Length: 129

Fln nts: GATCAGTAAAAACGACGCCGTCA_-_ATGAAGCCGTCCACCGTTCCCGACTGGCACGAAGAGCCAGGAAATGACCGAGAGGAGGACGACTGGGTGGTGCTGCGGGTGGGAGGTCAGGTGTTCGAAACCTCGCGGAGGACACTGTGCGCGGACAAGGACTCCATGCTCGCTGCCCTGGTGCTCCGCCATTGGCCCAAAGATGAAAATAATAACCAGAATTCCGTCATCAGAATCGACAGAGACGGTCAGAGATTCGCGCACGTCTTGAATTATCTCCGCGGCGGCATTGCCTGTGTGCAGGACGTCGGTCTCCTGCGCGGATTGCAGGAAGAGGCCGATTTCTTCTGCCTCGCTGGCTTCAGCGCCCTCTGCGACGAGCAAATCCAGCGGATCGAGGAGGCAGAGGAAGCGAA

Fln Alignment:

sp_v1.1_unigene49540___SMKPSTVPDWHEEPGNDREEDDWVVLRVGGQVFETSRRTLCADKDSMLAALVLRHWPKDENNNQNSVIRIDRDGQRFAHVLNYLRGGIACVQDVGLLRGLQEEADFFCLAGFSALCD
A9NZH3_______________SMMQATFPDWQEEPGNGRDENDWVVLRVGGQVFETSRQTLCADRKSMLAALVLRHLGKDDKNNKNSVIRIDRDGQRFAHVLNYLRSGTVWLQDVGLLRELQEEAEFFCLAGLSALCE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain