SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49420

Length: 506 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene49420
CCTTTCCACAATGGGAATCTTGCGGGCGATCGAGCCAACGGAGGAAATTAATGCGCCCATGAACATGAAATACGCCCTTACCAATCTAACCAAAACCTACTTCATCTCCAGGATATGAATTCCCGAAGCCTCGTTCCCTTCGTCTATTGCAGACACACCCAGTTTACGTGACCGCCTGGGACCATATTCACGAACGTGTGCTTCATGGCGGCGATAATTTCAAGAATTCCAGTGGCAATGGCCAAGAATTCTGGAATTTCACAGCCAGCAATCCAGAGTTCAACGCCATCTTCAACGCAGGCATGGTGTCCGTCACAAAGGCCACTATGGCAGAGATCTTAGCCATTTATGATGGTTTCAAAGACGTGAACACCCTGGTCGACTTGGGCGGAGGGCACGGGGAAGCGTTGAGTCTGATAATTGATGCGTACCCTCATATCCGCGCAATCAATTTTGATCTTCCTCAAGTTATCGCAACTGCACCAACTCTCCCCGGCGTACAACAC

Ace file of the UniGene sp_v1.1_unigene49420 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-methyltransferase n=4 Tax=Vitis vinifera RepID=D9YKY4_VITVI	-	-	3.0e-25	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	caffeic acid o-methyltransferase	-	-	1.16696e-25	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-methyltransferase, family 2	IPR001077	-	1.16696e-25	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPJ0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 121 aas, your sequence is shorter than subject: 168 - 438

Fln protein: FPQWESCGRSSQRRKLMRP*T*NTPLPI*PKPTSSPGYEFPKPRSLRLLQTHPVYVTAWDHIHERVLHGGDNFKNSSGNGQEFWNFTASNPEFNAIFNAGMVSVTKATMAEILAIYDGFKDVNTLVDLGGGHGEALSLIIDAYPHIRAINFDLPQVIATAPTLPGVQH

Protein Length: 169

Fln nts: CCTTTCCACAATGGGAATCTTGCGGGCGATCGAGCCAACGGAGGAAATTAATGCGCCCATGAACATGAAATACGCCCTTACCAATCTAACCAAAACCTACTTCATCTCCAGGATATGAATTCCCGAAGCCTCGTTCCCTTCGTCTATTGCAGACACACCCAGTTTACGTGACCGCCTGGGACCATATTCACGAACGTGTGCTTCATGGCGGCGATAATTTCAAGAATTCCAGTGGCAATGGCCAAGAATTCTGGAATTTCACAGCCAGCAATCCAGAGTTCAACGCCATCTTCAACGCAGGCATGGTGTCCGTCACAAAGGCCACTATGGCAGAGATCTTAGCCATTTATGATGGTTTCAAAGACGTGAACACCCTGGTCGACTTGGGCGGAGGGCACGGGGAAGCGTTGAGTCTGATAATTGATGCGTACCCTCATATCCGCGCAATCAATTTTGATCTTCCTCAAGTTATCGCAACTGCACCAACTCTCCCCGGCGTACAACAC

Fln Alignment:

sp_v1.1_unigene49420___TAWDHIHERVLHGGDNFKNSSGNGQEFWNFTASNPEFNAIFNAGMVSVTKATMAEILAIY-DGFKDVNTLVDLGGGHGEALSLIIDAYPHIRAINFDLPQVIATAPTLPGVQH
B8LPJ0_______________TGWEHLHESVIEGCSAFNRAFGMGP--WEYMSRYPKTGDMFNKGMATETRAVMASVVKIYNDGFKNINTLVDVGGGTGAALSMIVKQHPHIRGINLDLPHAIAGAPTLPGVEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain