SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49406

Length: 498 nt

UniGene Fasta

>sp_v1.1_unigene49406
TTGTGCCCAACATAATTCTGACCAATACCCTTATGAACATGTATGCCAAGCTAGGTAGCTTGGCTGACGCACGTAAATTGTTTGACGAAATGCTTCATCGAGATACCTGCTCTTGGAATACGCTAATCACATCGTATTCTCGCCACGGGCCTGCAGAAGAAGCGTTGCAGCTCTTTCACCAGATGCAGAGATCGATTTTCCGGCCTGACCGCTTCACTTATGCCAGCGTTCTCTCGGCTTGTGCCAAGCTGGGAGCTCTAGAAGAGGGCATCGAGATTCACCAAGAAATAGTTAGAAGCCAGTGCCAGATTTATGGTTTTGTAGAGAGTGCCCTAGTAGATTTGTATGCAAAATGTGGGAGAATAGAGAAGGCTCGAGAATTGTTTGACAGAATGTCTAAACGAGACACTGCCTTGTGGAACATCATGATAGCTGCGTATGGAAAGAAGGGACTTGTTGATAAAGCTTTCAATCTTTTCCAAGAAATTTCCAAGAGAG

Ace file of the UniGene sp_v1.1_unigene49406

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	3.0e-31	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	pentatricopeptide repeat protein 77	-	-	6.04712e-35	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	6.04712e-35	63%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	6.04712e-35	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 165 - 394

Fln protein: VPNIILTNTLMNMYAKLGSLADARKLFDEMLHRDTCSWNTLITSYSRHGPAEEALQLFHQMQRSIFRPDRFTYASVLSACAKLGALEEGIEIHQEIVRSQCQIYGFVESALVDLYAKCGRIEKARELFDRMSKRDTALWNIMIAAYGKKGLVDKAFNLFQEISKR

Protein Length: 166

Fln nts: TTGTGCCCAACATAATTCTGACCAATACCCTTATGAACATGTATGCCAAGCTAGGTAGCTTGGCTGACGCACGTAAATTGTTTGACGAAATGCTTCATCGAGATACCTGCTCTTGGAATACGCTAATCACATCGTATTCTCGCCACGGGCCTGCAGAAGAAGCGTTGCAGCTCTTTCACCAGATGCAGAGATCGATTTTCCGGCCTGACCGCTTCACTTATGCCAGCGTTCTCTCGGCTTGTGCCAAGCTGGGAGCTCTAGAAGAGGGCATCGAGATTCACCAAGAAATAGTTAGAAGCCAGTGCCAGATTTATGGTTTTGTAGAGAGTGCCCTAGTAGATTTGTATGCAAAATGTGGGAGAATAGAGAAGGCTCGAGAATTGTTTGACAGAATGTCTAAACGAGACACTGCCTTGTGGAACATCATGATAGCTGCGTATGGAAAGAAGGGACTTGTTGATAAAGCTTTCAATCTTTTCCAAGAAATTTCCAAGAGAG

Fln Alignment:

sp_v1.1_unigene49406___NIILTNTLMNMYAKLGSLADARKLFDEMLHRDTCSWNTLITSYSRHGPAEEALQLFHQMQRSIFRPDRFTYASVLSACAKLGALEEGIEIHQEIVRSQCQIYGFVESALVDLYAKCGRIEKARELFDRMSKRDTALWNIMIAAYGKKGLVDKAFNLFQEI
B8LKN6_______________DVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain