SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49346

Length: 249 nt

UniGene Fasta

>sp_v1.1_unigene49346
ATGGGGGGCCGCTATAGAAGAAAAATGGCACCAGATGTGACATTACGTCAGTGGCGAAAAGGGTCACAGTGGTTTGAGATTCATCGTAAGCTGGCAATTAACATAATTTCTGACACCAAGTATTACGCAATATTCAAGGCATTTTGCACACCATCTTGTTATGTTGATGAGCATTACCTTCCAACTATTTTGAATATGAAGTTTGGATCTCTAAATTCTAACAGAAGTATTACATGGTTGACTGGCCAA

Ace file of the UniGene sp_v1.1_unigene49346

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Branch domain containing protein	-	-	2.0e-26	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	4.31306e-33	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 14	IPR003406	-	4.31306e-33	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB94

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 83 - 345

Fln protein: MGGRYRRKMAPDVTLRQWRKGSQWFEIHRKLAINIISDTKYYAIFKAFCTPSCYVDEHYLPTILNMKFGSLNSNRSITWLTGQ

Protein Length: 84

Fln nts: ATGGGGGGCCGCTATAGAAGAAAAATGGCACCAGATGTGACATTACGTCAGTGGCGAAAAGGGTCACAGTGGTTTGAGATTCATCGTAAGCTGGCAATTAACATAATTTCTGACACCAAGTATTACGCAATATTCAAGGCATTTTGCACACCATCTTGTTATGTTGATGAGCATTACCTTCCAACTATTTTGAATATGAAGTTTGGATCTCTAAATTCTAACAGAAGTATTACATGGTTGACTGGCCAA

Fln Alignment:

sp_v1.1_unigene49346___GRYRRKMAPDVTLRQWRKGSQWFEIHRKLAINIISDTKYYAIFKAFCTPSCYVDEHYLPTILNMKFGSLNSNRSITWL
D5AB94_______________GRYNIKMAPEVTLSQWRKGSQWFEVHRKLAIDIISDTKYYQIFKAFCKPSCYIDEHYIPTILSMQFGSLISNRSITWV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain