SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49325

Length: 440 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene49325
GAAACACGTGAAGGACTTCACATTTATTCATGGATATATAGAACCTGTGATGGTCATACTTCATGAGAGGGAGCCTACATGGGCAGGGCGCCTAGCCTGGAAGCATCACACATGCACAATTTCAGCACTTAGCATCAGCATGACTTTAAAGCAGCATCCTCTTATTTGGTCTGCTCCTAACCTTCCACATGATGCCTATAAGCTTCTTGCGGTGCCTTCTCCTATTGGTGGTGTGCTTGTAATATGTGCCAACAGTCTTCATTATCACAGCCAGTCTGTATCTTGTGCACTGGCATTAAATGATTTCGCAATGACTACTGAAGGCAGCTCAGAGATGCCAAGGTCAAATATTGATGTGGAGCTTGATTCTGCTCATGCGACCTGGATATCAAGTGATGTGGCACTGTTCTCAACAAAAACAGGGAATCTTTTGTTGCTTT

Ace file of the UniGene sp_v1.1_unigene49325 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[A] COG5161 Pre-mRNA cleavage and polyadenylation specificity factor	-	-	5.0e-09	25%
FL-Next	sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Blast2go	cleavage and polyadenylation specificity factor subunit 1	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	mRNA polyadenylation	GO:0006378	Biological Process	79%
Blast2go	RNA splicing	GO:0008380	Biological Process	79%
Blast2go	mRNA cleavage	GO:0006379	Biological Process	79%
Blast2go	mRNA 3'-UTR binding	GO:0003730	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	mRNA cleavage and polyadenylation specificity factor complex	GO:0005847	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FGR0

Fln msg: Distance to subject end: 1050 aas, your sequence is shorter than subject: 146 - 1442

Fln protein: KHVKDFTFIHGYIEPVMVILHEREPTWAGRLAWKHHTCTISALSISMTLKQHPLIWSAPNLPHDAYKLLAVPSPIGGVLVICANSLHYHSQSVSCALALNDFAMTTEGSSEMPRSNIDVELDSAHATWISSDVALFSTKTGNLLLL

Protein Length: 147

Fln nts: GAAACACGTGAAGGACTTCACATTTATTCATGGATATATAGAACCTGTGATGGTCATACTTCATGAGAGGGAGCCTACATGGGCAGGGCGCCTAGCCTGGAAGCATCACACATGCACAATTTCAGCACTTAGCATCAGCATGACTTTAAAGCAGCATCCTCTTATTTGGTCTGCTCCTAACCTTCCACATGATGCCTATAAGCTTCTTGCGGTGCCTTCTCCTATTGGTGGTGTGCTTGTAATATGTGCCAACAGTCTTCATTATCACAGCCAGTCTGTATCTTGTGCACTGGCATTAAATGATTTCGCAATGACTACTGAAGGCAGCTCAGAGATGCCAAGGTCAAATATTGATGTGGAGCTTGATTCTGCTCATGCGACCTGGATATCAAGTGATGTGGCACTGTTCTCAACAAAAACAGGGAATCTTTTGTTGCTTT

Fln Alignment:

sp_v1.1_unigene49325___KHVKDFTFIHGYIEPVMVILHEREPTWAGRLAWKHHTCTISALSISMTLKQHPLIWSAPNLPHDAYKLLAVPSPIGGVLVICANSLHYHSQSVSCALALNDFAMTTEGSSEMPRSNIDVELDSAHATWISSDVALFSTKTGNLLLL
Q9FGR0_______________KHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQHPVIWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELPASNFSVELDAAHGTWISNDVALLSTKSGELLLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain