SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49303

Length: 373 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene49303
AGCACTGCAGTCCGGTGTGATTGTCTTTGGTATATGCGCAATAAAACATGGAGCGTCTGGATTGTTGGTTGGAATATTGAGCTTCTGAGTTATGTGTATTCGTGGTTGATTTGTTCAGCATTTGCAATATTCGTGCAAGCGTGGTGTATACACAAAATGGGACCTGTATTCGTAGCAATCTTCGATCCAGTGTGTACCGTTGTAGCAGCAATCCTGCAATATTTCGTTCTTCATGACAATCTTAATACAGGATGTGTAGTGGGAGCAGTCTTGATTGTAGTGGGTCTGTATCCTGTACTATGGGCAAAGCAGAGGACTATAAAAACGAGTGTCCAGTTGAAGTAGCTTGCTCCAGTGAAATACAGTTGAAGTT

Ace file of the UniGene sp_v1.1_unigene49303

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EamA domain containing protein	-	-	1.0e-05	17%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	integral membrane protein duf6 containing expressed	-	-	7.31262e-28	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Drug/metabolite transporter	IPR000620	-	7.31262e-28	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABM1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 25 aas, your sequence is shorter than subject: 115 - 371

Fln protein: STAVRCDCLWYMRNKTWSVWIVGWNIELLSYVYSWLICSAFAIFVQAWCIHKMGPVFVAIFDPVCTVVAAILQYFVLHDNLNTGCVVGAVLIVVGLYPVLWAKQRTIKTSVQLK*

Protein Length: 116

Fln nts: AGCACTGCAGTCCGGTGTGATTGTCTTTGGTATATGCGCAATAAAACATGGAGCGTCTGGATTGTTGGTTGGAATATTGAGCTTCTGAGTTATGTGTATTCGTGGTTGATTTGTTCAGCATTTGCAATATTCGTGCAAGCGTGGTGTATACACAAAATGGGACCTGTATTCGTAGCAATCTTCGATCCAGTGTGTACCGTTGTAGCAGCAATCCTGCAATATTTCGTTCTTCATGACAATCTTAATACAGGATGTGTAGTGGGAGCAGTCTTGATTGTAGTGGGTCTGTATCCTGTACTATGGGCAAAGCAGAGGACTATAAAAACGAGTGTCCAGTTGAAGTAGCTTGCTCCAGTGAAATACAGTTGAAGTT

Fln Alignment:

sp_v1.1_unigene49303___KTWSVWIVGWNIELLSYVYSWLICSAFAIFVQAWCIHKMGPVFVAIFDPVCTVVAAILQYFVLHDNLNTGCVVGAVLIVVGLYPVLWAKQR
D5ABM1_______________KTPSVWSISWNIEPLSYVYTGVLCSAFAFFVQTWCVHTKGPVFAAIFNPLSTILVALLECLVFHDNLHAGSVVGAVLIVGGLYSVLWGKAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain