SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49061

Length: 406 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene49061
ATGGGGGTCTAATAATGGAGGATAATACACATCCAAGGAAATTATAGCCTTATATAAGGAATATGGGATTAAGAGGGAGCTAATAGTCCCATATAATCTCGAACAAGATGGAGTTGTAGAACAAAAGAATTAGTGCACAGAAGAAAGTGTAAAAGTTATGCTATATGATCAAAATTTGTTGAAATTTCTGTGGGGTGAAGCAACAAAGACAATTGTATACATACAAAATCGAAGTCCCCATAGGTCACTAGATAACTTAACTCCTGAAGAAATATTCACTGGGAAGAAACCAAGCGTAGAATCGTGTTTGAATTTTTGGTAGTCCTGTTTATATTCATATACCGAAGGACAAGAGAAAGAAGTTAGATCCATCAGGGACGAAGGGAACATTTGTTGGCTACAGTGA

Ace file of the UniGene sp_v1.1_unigene49061

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH	-	-	3.0e-20	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	copia-type polyprotein	-	-	1.63742e-21	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Separated hits, possible frame ERROR between 298 and 312, Distance to subject end: 73 aas, your sequence is shorter than subject: 135 - 407

Fln protein: WGSNNGG*YTSKEIIALYKEYGIKRELIVPYNLEQDGVVEQKN*CTEESVKVMLYDQNLLKFLWGEATKTIVYIQNRSPHRSLDNLTPEEIFTGKKPSxxxxxxIFGSPVYIHIPKDKRKKLDPSGTKGTFVGYS

Protein Length: 136

Fln nts: ATGGGGGTCTAATAATGGAGGATAATACACATCCAAGGAAATTATAGCCTTATATAAGGAATATGGGATTAAGAGGGAGCTAATAGTCCCATATAATCTCGAACAAGATGGAGTTGTAGAACAAAAGAATTAGTGCACAGAAGAAAGTGTAAAAGTTATGCTATATGATCAAAATTTGTTGAAATTTCTGTGGGGTGAAGCAACAAAGACAATTGTATACATACAAAATCGAAGTCCCCATAGGTCACTAGATAACTTAACTCCTGAAGAAATATTCACTGGGAAGAAACCAAGCGTxxxxxxxxxxxxxxxAATTTTTGGTAGTCCTGTTTATATTCATATACCGAAGGACAAGAGAAAGAAGTTAGATCCATCAGGGACGAAGGGAACATTTGTTGGCTACAGTGA

Fln Alignment:

sp_v1.1_unigene49061___SNNGG*YTSKEIIALYKEYGIKRELIVPYNLEQDGVVEQKN*CTEESVKVMLYDQNLLKFLWGEATKTIVYIQNRSPHRSLDNLTPEEIFTGKKPSVxxxxxIFGSPVYIHIPKDKRKKLDPSGTKGTFVGYS
B8LKX7_______________TDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVxxxxxVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain