SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49039

Length: 322 nt

UniGene Fasta

>sp_v1.1_unigene49039
CGTCGTGACCTTGGCTGTCACTCAGTGACCAGAAAGTCGGGTCGGGGTAAACATTCCGTTCTCAGGGGGGGTGGACGGATGCTGATGGAACGTGCCAGTATTTAAATATATATAGCGGTAGAGAGTGGGTTGGAAGAAATATAGCTTTACACAAATTTAGCTGAAGATGGAACCGAGCGATGTGACTTTGAATATTTACACTGACCACATAGTTATGGACAATGGTATTGTAAAGGTCACGCTATCGAAACCCCAAGGAGCTGTGACTGAGATTGAATATGGCGGCATAGACAACATGATGGAGACTCTGAATTTGGAGGCC

Ace file of the UniGene sp_v1.1_unigene49039

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lyase, putative n=1 Tax=Ricinus communis RepID=B9SMY3_RICCO	-	-	2.0e-08	59%
FL-Next	tr=Lyase, putative; Ricinus communis (Castor bean).	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Rhamnogalacturonate lyase	IPR010325	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9SMY3

Fln msg: Distance to subject end: 581 aas, your sequence is shorter than subject: 52 - 633

Fln protein: MEPSDVTLNIYTDHIVMDNGIVKVTLSKPQGAVTEIEYGGIDNMMETLNLEA

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGACCAGAAAGTCGGGTCGGGGTAAACATTCCGTTCTCAGGGGGGGTGGACGGATGCTGATGGAACGTGCCAGTATTTAAATATATATAGCGGTAGAGAGTGGGTTGGAAGAAATATAGCTTTACACAAATTTAGCTGAAG_-_ATGGAACCGAGCGATGTGACTTTGAATATTTACACTGACCACATAGTTATGGACAATGGTATTGTAAAGGTCACGCTATCGAAACCCCAAGGAGCTGTGACTGAGATTGAATATGGCGGCATAGACAACATGATGGAGACTCTGAATTTGGAGGCC

Fln Alignment:

sp_v1.1_unigene49039___VTLNIYTDHIVMDNGIVKVTLSKPQGAVTEIEYGGIDNMMETLNLEA
B9SMY3_______________VRLHIQDRHVVMENGIVQITLSKPEGIVTGIRYSGIDNLLEILNRES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain