SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene49021

Length: 215 nt

UniGene Fasta

>sp_v1.1_unigene49021
ATGGTTTGTTTTGGAGATGCAGATGTTATGGTAGCTGGAGGGACTGAGTCAAGTATTGATGCACTGTCAATAGCTGGGTTTTGCAGAGCTAGAGCATTGAGCACAAAGTATAACTCATCTCCAAACAAGTCTTCTCGTCCATTTGACTGTAATCGTGATGGATTTGTTATAGGTGAAGGTGCTGGTATTATGGTATTGGAGGAGCTTGAGCATGC

Ace file of the UniGene sp_v1.1_unigene49021

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-oxoacyl-[acyl-carrier-protein] synthase, putative n=1 Tax=Ricinus communis RepID=B9SSI1_RICCO	-	-	2.0e-27	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	3-oxoacyl carrier protein synthase	-	-	3.54465e-27	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	acyltransferase activity	GO:0008415	Molecular Function	3.54465e-27	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Beta-ketoacyl synthase	IPR000794	-	3.54465e-27	90%
Blast2go	Beta-ketoacyl synthase, N-terminal	IPR014030	-	3.54465e-27	90%
Blast2go	Thiolase-like, subgroup	IPR016038	-	3.54465e-27	90%
Blast2go	Thiolase-like	IPR016039	-	3.54465e-27	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD41

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 71 - 289

Fln protein: MVCFGDADVMVAGGTESSIDALSIAGFCRARALSTKYNSSPNKSSRPFDCNRDGFVIGEGAGIMVLEELEH

Protein Length: 72

Fln nts: ATGGTTTGTTTTGGAGATGCAGATGTTATGGTAGCTGGAGGGACTGAGTCAAGTATTGATGCACTGTCAATAGCTGGGTTTTGCAGAGCTAGAGCATTGAGCACAAAGTATAACTCATCTCCAAACAAGTCTTCTCGTCCATTTGACTGTAATCGTGATGGATTTGTTATAGGTGAAGGTGCTGGTATTATGGTATTGGAGGAGCTTGAGCATGC

Fln Alignment:

sp_v1.1_unigene49021___GDADVMVAGGTESSIDALSIAGFCRARALSTKYNSSPNKSSRPFDCNRDGFVIGEGAGIMVLEELEH
D5AD41_______________GEADVMLSGGSDAAIIPIGVGGFVACRALSQR-NEDPTKASRPWDVDRDGFVMGEGAGVLLLEELEH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain