SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48984

Length: 278 nt

UniGene Fasta

>sp_v1.1_unigene48984
CGGGCTGGAAACGGGAGCCGCCGCAGGCGGTACTTCGGCTCTAGGCCCAGACGGGACGTCGATTGCTCAAAACCCCGCGGGGCCTCTTCCAGTTCCAAACTCAAATGCCGGGCAAAAAAATCTCCAAGAGGAATTTCAGGCAAACAGTGTGCAGGCACTGGCTGAGGGGTTTGTGTATGAAGGGGGATTATTGCGGGTATCTTCATCAGCTTGACAAGGTAAGAATGCCCATCTGCAGGTTTTTTGCTAAGTGTGGAGAGTGCCGCGAACCTGACTGC

Ace file of the UniGene sp_v1.1_unigene48984

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CPSF30; CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding	-	-	1.0e-19	82%
FL-Next	Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30	-	-	0.0	82%
Blast2go	c-x8-c-x5-c-x3-h type zn-finger	-	-	4.49971e-22	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	4.49971e-22	83%
Blast2go	endonuclease activity	GO:0004519	Molecular Function	4.49971e-22	83%
Blast2go	RNA binding	GO:0003723	Molecular Function	4.49971e-22	83%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	4.49971e-22	83%
Blast2go	nucleus	GO:0005634	Cellular Component	4.49971e-22	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A9LNK9-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 142 aas, your sequence is shorter than subject: 92 - 250

Fln protein: GWKREPPQAVLRL*AQTGRRLLKTPRGLFQFQTQMPGKKISKRNFRQTVCRHWLRGLCMKGDYCGYLHQLDKVRMPICRFFAKCGECREPDC

Protein Length: 93

Fln nts: CGGGCTGGAAACGGGAGCCGCCGCAGGCGGTACTTCGGCTCTAGGCCCAGACGGGACGTCGATTGCTCAAAACCCCGCGGGGCCTCTTCCAGTTCCAAACTCAAATGCCGGGCAAAAAAATCTCCAAGAGGAATTTCAGGCAAACAGTGTGCAGGCACTGGCTGAGGGGTTTGTGTATGAAGGGGGATTATTGCGGGTATCTTCATCAGCTTGACAAGGTAAGAATGCCCATCTGCAGGTTTTTTGCTAAGTGTGGAGAGTGCCGCGAACCTGACTGC

Fln Alignment:

sp_v1.1_unigene48984___RNFRQTVCRHWLRGLCMKGDYCGYLHQLDKVRMPICRFFAKCGECREPDC
A9LNK9-2_____________RSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain