SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48956

Length: 265 nt

UniGene Fasta

>sp_v1.1_unigene48956
ATGGGATGGCGTGACCATTCAGGACTTACAGATGGACTGCTGCAGGGCGTGGATCTGGTGGGTGGTTACTATGATGCTGGAGACCATGTCAAATTCGGCCTTCCAATGGCTTTTACNGTCACAATACTTTCCTGGAGTGTGATTGAGTATGGGAAACAGATTGATGCAGCAGGTCAGCTGGGATATACATTGGAGGCAATCAAGTGGGGAACAGATTACTTTATGAAAGCTCATTCTGAGCCTGAAGTCCTCTGGGGTGAGGTGG

Ace file of the UniGene sp_v1.1_unigene48956

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endoglucanase 7 n=2 Tax=Oryza sativa RepID=GUN7_ORYSJ	-	-	7.0e-28	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	endo-beta- -glucanase	-	-	1.23997e-27	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	1.23997e-27	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 9	IPR001701	-	1.23997e-27	89%
Blast2go	Six-hairpin glycosidase-like	IPR008928	-	1.23997e-27	89%
Blast2go	Six-hairpin glycosidase	IPR012341	-	1.23997e-27	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVI7

Fln msg: Distance to subject end: 363 aas, your sequence is shorter than subject: 88 - 532

Fln protein: MGWRDHSGLTDGLLQGVDLVGGYYDAGDHVKFGLPMAFTVTILSWSVIEYGKQIDAAGQLGYTLEAIKWGTDYFMKAHSEPEVLWGEV

Protein Length: 89

Fln nts: ATGGGATGGCGTGACCATTCAGGACTTACAGATGGACTGCTGCAGGGCGTGGATCTGGTGGGTGGTTACTATGATGCTGGAGACCATGTCAAATTCGGCCTTCCAATGGCTTTTACaGTCACAATACTTTCCTGGAGTGTGATTGAGTATGGGAAACAGATTGATGCAGCAGGTCAGCTGGGATATACATTGGAGGCAATCAAGTGGGGAACAGATTACTTTATGAAAGCTCATTCTGAGCCTGAAGTCCTCTGGGGTGAGGTGG

Fln Alignment:

sp_v1.1_unigene48956___WRDHSXXXXXXXXXXXXXXXYYDAGDHVKFGLPMAFTVTILSWSVIEYGKQIDAAGQLGYTLEAIKWGTDYFMKAHSEPEVLWGEV
A9NVI7_______________WRGDSALSDGNDVGVDLSGGMYDAGDHIKFGLPMAFTATLLSWGVLEYGDQMDAAHQLGAAQLAIKWITDYLIKAHPSSNVLYVQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain