SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48861

Length: 268 nt

UniGene Fasta

>sp_v1.1_unigene48861
TTATTGCAGGTGGTCGTGAGTTTGCTCTGTTCTCGAGCTTCAGCAGAGCAACAAATCGCCGGATTCGAACCGCCGGCCCCAGGCATCCGAGAGAGTGAACCTGGAAGACATATTGGCTGAGAGAGGTGCCTGTGGTGTAGGATTTGTTGCAAGTCTACGGAATAATCCATCTCATAGCATTATACAGGATGCTCTCACAGCGCTGAGTTGCATGGAGCATCGTGGAGGATGTGGTGCAGACAATGATTCAGGGGATGGTGCGTGGGAT

Ace file of the UniGene sp_v1.1_unigene48861

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GLU1; GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin); K00284 glutamate synthase (ferredoxin) [EC:1.4.7.1]	-	-	8.0e-21	58%
FL-Next	Isoform 2 of Ferredoxin-dependent glutamate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=GLU1	-	-	0.0	58%
Blast2go	ferredoxin-dependent glutamate synthase 1	-	-	1.32321e-21	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate synthase (ferredoxin).	EC:1.4.7.1	-	1.32321e-21	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		1.32321e-21	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Glutamate synthase (ferredoxin).	EC:1.4.7.1	-	8.0e-21	58%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Nitrogen metabolism	00910		8.0e-21	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	1.32321e-21	80%
Blast2go	photorespiration	GO:0009853	Biological Process	1.32321e-21	80%
Blast2go	positive regulation of glycine hydroxymethyltransferase activity	GO:0080114	Biological Process	1.32321e-21	80%
Blast2go	glutamate synthase (ferredoxin) activity	GO:0016041	Molecular Function	1.32321e-21	80%
Blast2go	protein binding	GO:0005515	Molecular Function	1.32321e-21	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.32321e-21	80%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.32321e-21	80%
Blast2go	membrane	GO:0016020	Cellular Component	1.32321e-21	80%
Blast2go	apoplast	GO:0048046	Cellular Component	1.32321e-21	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZNZ7-2

Fln msg: Distance to subject end: 1471 aas, your sequence is shorter than subject: 89 - 1622

Fln protein: YCRWS*VCSVLELQQSNKSPDSNRRPQASERVNLEDILAERGACGVGFVASLRNNPSHSIIQDALTALSCMEHRGGCGADNDSGDGAWD

Protein Length: 90

Fln nts: TTATTGCAGGTGGTCGTGAGTTTGCTCTGTTCTCGAGCTTCAGCAGAGCAACAAATCGCCGGATTCGAACCGCCGGCCCCAGGCATCCGAGAGAGTGAACCTGGAAGACATATTGGCTGAGAGAGGTGCCTGTGGTGTAGGATTTGTTGCAAGTCTACGGAATAATCCATCTCATAGCATTATACAGGATGCTCTCACAGCGCTGAGTTGCATGGAGCATCGTGGAGGATGTGGTGCAGACAATGATTCAGGGGATGGTGCGTGGGAT

Fln Alignment:

sp_v1.1_unigene48861___RWS*VCSVLELQ------QSNKSPDSNRRPQASERVNLEDILAERGACGVGFVASLRNNPSHSIIQDALTALSCMEHRGGCGADNDSGDGA
Q9ZNZ7-2_____________RLSSVRAVIDLERVHGVSEKDLSSPSALRPQVA---NLEDILSERGACGVGFIANLDNIPSHGVVKDALIALGCMEHRGGCGADNDSGDGS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
20		33	66		0.997459
21		33		66	0.997461

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain