SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48832

Length: 253 nt

UniGene Fasta

>sp_v1.1_unigene48832
GCTTATGCTCGGTGACACAGGTGGAGGAAGTGAAGATAATGCTGAGAGTTGTACCCATCTTTGCCAGCACTATCATGATGAATTGCTGCCTGGCACAGTTACAGACATTCTCAGTTGAGCAGGCAACAACAATGGACACCACCATTAAAACTTCAAGGTCCCAGCTGCTTCACTGCCCTCAATTCCAGTGATCTGCATGATAATTCTCATACCCATATACGATCAGGCCTTCGTTCCAATCGCCCGCAGAATA

Ace file of the UniGene sp_v1.1_unigene48832

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nitrate transporter, putative	-	-	1.0e-13	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	peptide transporter ptr2	-	-	4.38033e-14	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligopeptide transporter	IPR000109	-	4.38033e-14	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 198 aas, your sequence is shorter than subject: 63 - 628

Fln protein: LCSVTQVEEVKIMLRVVPIFASTIMMNCCLAQLQTFSVEQATTMDTTIKTSRSQLLHCPQFQ*

Protein Length: 64

Fln nts: GCTTATGCTCGGTGACACAGGTGGAGGAAGTGAAGATAATGCTGAGAGTTGTACCCATCTTTGCCAGCACTATCATGATGAATTGCTGCCTGGCACAGTTACAGACATTCTCAGTTGAGCAGGCAACAACAATGGACACCACCATTAAAACTTCAAGGTCCCAGCTGCTTCACTGCCCTCAATTCCAGTGATCTGCATGATAATTCTCATACCCATATACGATCAGGCCTTCGTTCCAATCGCCCGCAGAATA

Fln Alignment:

sp_v1.1_unigene48832___LCSVTQVEEVKIMLRVVPIFASTIMMNCCLAQLQTFSVEQATTMDTTIKTS
B8LLJ8_______________LCTVTQVEQVKLVIRVIPIFACTIVMNCILAQLQTFSVQQGSTMDNRLGRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain