SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48624

Length: 317 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene48624
AGGATATGTGCACGACTCCAGCATAAAAATGTTCTACCCATTTGTGGTTATACATTCGGCTTCGGCCCATTGATAGCGATAGTCAGTCCCTGGGCAGAAAATGGAAACTTGACAACCTATTTGGAGCGCTCTGGTGCAGCGCTCAGTGTCATCAGACGATTCCAAATTCTCAGAGATATTACACATGGCCTGCGATACCTCCACACCAATAATGTCATTCATGGCGACTTCAATGGGCCCAATGTACTCGTTTATGGTGATGGCACCGCTTGCCTCGCTGACTTCGGTCTTTCCCTAATGCACTCTGAGCTTTTGAG

Ace file of the UniGene sp_v1.1_unigene48624

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TKL/TKL-ccin protein kinase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NQJ6_COPC7	-	-	5.0e-18	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	protein	-	-	9.00008e-18	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	9.00008e-18	58%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	9.00008e-18	58%
Blast2go	Protein kinase-like domain	IPR011009	-	9.00008e-18	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSF3

Fln msg: Distance to subject end: 133 aas, your sequence is shorter than subject: 105 - 594

Fln protein: RICARLQHKNVLPICGYTFGFGPLIAIVSPWAENGNLTTYLERSGAALSVIRRFQILRDITHGLRYLHTNNVIHGDFNGPNVLVYGDGTACLADFGLSLMHSELL

Protein Length: 106

Fln nts: AGGATATGTGCACGACTCCAGCATAAAAATGTTCTACCCATTTGTGGTTATACATTCGGCTTCGGCCCATTGATAGCGATAGTCAGTCCCTGGGCAGAAAATGGAAACTTGACAACCTATTTGGAGCGCTCTGGTGCAGCGCTCAGTGTCATCAGACGATTCCAAATTCTCAGAGATATTACACATGGCCTGCGATACCTCCACACCAATAATGTCATTCATGGCGACTTCAATGGGCCCAATGTACTCGTTTATGGTGATGGCACCGCTTGCCTCGCTGACTTCGGTCTTTCCCTAATGCACTCTGAGCTTTTGAG

Fln Alignment:

sp_v1.1_unigene48624___ICARLQHKNVLPICGYTFGFGPLIAIVSPWAENGNLTTYLERSGAALSVIRRFQILRDITHGLRYLHTNNVIHGDFNGPNVLVYGDGTACLADFGLSLMHSE
C0PSF3_______________IMRKVRHKNVVQFIGACTR-PPNLCIVTEFMSGGSVYDYLHKQKGVFKLPALLKVAIDVSRGMDYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVQAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain