SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48620

Length: 426 nt

UniGene Fasta

>sp_v1.1_unigene48620
CAAATCTCTGGTGGATAGCAAGGGTGTTCATGGTTGTATCATCAAAATTGGATTCCAAGGAGGCACATTCATATGGAATCGGCTGATGGACACCTATATGAAATGTGGAAGCTTGGAGAATGCACGCCAGGTGTTTGACAAAATGTATACGAAGGATACAATTTCATGGAATACAATGATTGGGGGATATGCGAAATTTGGTAGTATTCAGGAGGCACGCCGACTGTTTGACAGAATGCCTGAGCAAAATGTGGTTTCTTGGAACGCTGTGATTGCGGGATATGCCGGACATGGGCATCCGGAGGAGGCCCTGGAACTTTTTAAACATATGCAAGTGGCAGGCTTCGAGTCGGACCGCATCACATATGCATGTGTTCTCAGTGTGTGTGCCAGTCTACTGTCTCTGCAGCAGGGTGAAGCAGACCA

Ace file of the UniGene sp_v1.1_unigene48620

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RGS8_RICCO	-	-	9.0e-25	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	pentatricopeptide repeat-containing	-	-	7.50518e-25	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	7.50518e-25	65%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	7.50518e-25	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Distance to subject end: 349 aas, your sequence is shorter than subject: 141 - 514

Fln protein: KSLVDSKGVHGCIIKIGFQGGTFIWNRLMDTYMKCGSLENARQVFDKMYTKDTISWNTMIGGYAKFGSIQEARRLFDRMPEQNVVSWNAVIAGYAGHGHPEEALELFKHMQVAGFESDRITYACVLSVCASLLSLQQGEAD

Protein Length: 142

Fln nts: CAAATCTCTGGTGGATAGCAAGGGTGTTCATGGTTGTATCATCAAAATTGGATTCCAAGGAGGCACATTCATATGGAATCGGCTGATGGACACCTATATGAAATGTGGAAGCTTGGAGAATGCACGCCAGGTGTTTGACAAAATGTATACGAAGGATACAATTTCATGGAATACAATGATTGGGGGATATGCGAAATTTGGTAGTATTCAGGAGGCACGCCGACTGTTTGACAGAATGCCTGAGCAAAATGTGGTTTCTTGGAACGCTGTGATTGCGGGATATGCCGGACATGGGCATCCGGAGGAGGCCCTGGAACTTTTTAAACATATGCAAGTGGCAGGCTTCGAGTCGGACCGCATCACATATGCATGTGTTCTCAGTGTGTGTGCCAGTCTACTGTCTCTGCAGCAGGGTGAAGCAGACCA

Fln Alignment:

sp_v1.1_unigene48620___SLVDSKGVHGCIIKIGFQGGTFIWNRLMDTYMKCGSLENARQVFDKMYTKDTISWNTMIGGYAKFGSIQEARRLFDRMPEQNVVSWNAVIAGYAGHGHPEEALELFKHMQVAGFESDR
D5AD86_______________SLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain