SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48565

Length: 306 nt

UniGene Fasta

>sp_v1.1_unigene48565
ATGGAAGTACATTGGGCCTTTATGAAGCCCTGACTGGAAGGTCTCGTCTTTGTGACTTGATTTCAGACTCCGTGGTTTGTTGCTTCTTTATTGAAACAGAAAAAGTTCTTTCAGCGCTTCGATCAACACCAGCTATAGAGGATTTCTTTTGGCAGGAAAGTGCAATGGTTGTTGCTAAACTTCTTCTGCCTCAACAATTTGAGGAGATGACAATGCAAGAGATGCGAGCACTAGTTTTGGAGAGGTCAATGATGCGTACTTACTTACGAGGCGAAATGATAGAAATTCTACCATATAATGTTGGAA

Ace file of the UniGene sp_v1.1_unigene48565

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sodium/hydrogen exchanger plant, putative n=1 Tax=Ricinus communis RepID=B9S7C8_RICCO	-	-	5.0e-33	66%
FL-Next	sp=Sodium/hydrogen exchanger 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	salt overly sensitive 1	-	-	9.66634e-33	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Na+/H+ exchanger, isoforms 7/8	IPR018418	-	9.66634e-33	80%
Blast2go	Cation/H+ exchanger, CPA1 family	IPR018422	-	9.66634e-33	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LKW9

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 101 - 1146

Fln protein: GSTLGLYEALTGRSRLCDLISDSVVCCFFIETEKVLSALRSTPAIEDFFWQESAMVVAKLLLPQQFEEMTMQEMRALVLERSMMRTYLRGEMIEILPYNVG

Protein Length: 102

Fln nts: ATGGAAGTACATTGGGCCTTTATGAAGCCCTGACTGGAAGGTCTCGTCTTTGTGACTTGATTTCAGACTCCGTGGTTTGTTGCTTCTTTATTGAAACAGAAAAAGTTCTTTCAGCGCTTCGATCAACACCAGCTATAGAGGATTTCTTTTGGCAGGAAAGTGCAATGGTTGTTGCTAAACTTCTTCTGCCTCAACAATTTGAGGAGATGACAATGCAAGAGATGCGAGCACTAGTTTTGGAGAGGTCAATGATGCGTACTTACTTACGAGGCGAAATGATAGAAATTCTACCATATAATGTTGGAA

Fln Alignment:

sp_v1.1_unigene48565___GSTLGLYEALTGRSRLCDLISDSVVCCFFIETEKVLSALRSTPAIEDFFWQESAMVVAKLLLPQQFEEMTMQEMRALV-LERSMMRTYLRGEMIEILPYNVG
Q9LKW9_______________GSTLGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQSDSTIDDFLWQESALVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNSIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain