SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48444

Length: 389 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene48444
CATATGTGATAATAGTTCATATAGTCTATAGTTTGTCTAAGGATCTCGGCCTTCCAGGCTTTAGAATTGGTGCAATATACTCATACAATAACACCGTAGTGAAAACTGCTAGAAGAATGTCAAGTTTTTGCATGGTTTCCTCCCAGACACAGCATATGTTGTCTGCTCTACTTTCAGATTTCAAGTTCATGAACCATTTCATATCAGAGAATCAGAAGAGACTTCGAGAAAGGCATAGATTTCTTGTCTCAGGGCTCCAGAAAGCGGGTATTACATGCTTAAAAAGCAATGCTGGTCTTTTTGTTGGGTTGATATGAGGCATCTTCTGCCATCACCTGACGTGAACGGGGAGTTAATGCTTTGGCAAAGTATATTAGACGAGGCGGGGC

Ace file of the UniGene sp_v1.1_unigene48444 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-aminocyclopropane-1-carboxylate synthase 1 (Fragment) n=1 Tax=Pinus sylvestris RepID=Q56VN2_PINSY	-	-	98%
FL-Next	tr=ACC synthase; Picea glauca (White spruce) (Pinus glauca).	-	-	77%
Blast2go	acc synthase	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	82%
Blast2go	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	82%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	82%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	82%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A2IA37

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 45 aas, your sequence is shorter than subject: 105 - 447

Fln protein: YVIIVHIVYSLSKDLGLPGFRIGAIYSYNNTVVKTARRMSSFCMVSSQTQHMLSALLSDFKFMNHFISENQKRLRERHRFLVSGLQKAGITCLKSNAGLFVGLI*

Protein Length: 106

Fln nts: CATATGTGATAATAGTTCATATAGTCTATAGTTTGTCTAAGGATCTCGGCCTTCCAGGCTTTAGAATTGGTGCAATATACTCATACAATAACACCGTAGTGAAAACTGCTAGAAGAATGTCAAGTTTTTGCATGGTTTCCTCCCAGACACAGCATATGTTGTCTGCTCTACTTTCAGATTTCAAGTTCATGAACCATTTCATATCAGAGAATCAGAAGAGACTTCGAGAAAGGCATAGATTTCTTGTCTCAGGGCTCCAGAAAGCGGGTATTACATGCTTAAAAAGCAATGCTGGTCTTTTTGTTGGGTTGATATGAGGCATCTTCTGCCATCACCTGACGTGAACGGGGAGTTAATGCTTTGGCAAAGTATATTAGACGAGGCGGGGC

Fln Alignment:

sp_v1.1_unigene48444___VHIVYSLSKDLGLPGFRIGAIYSYNNTVVKTARRMSSFCMVSSQTQHMLSALLSDFKFMNHFISENQKRLRERHRFLVSGLQKAGITCLKSNAGLF
A2IA37_______________VHIVYSLSKDLGLPGFRVGAIYSYNDTVVSTARRMSSFSLVSSQTQHFLACMLSDEDFTKKYIEANKKRLRKRHRIMVSGLQKAGINCLKSNAGLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain