SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48442

Length: 369 nt

UniGene Fasta

>sp_v1.1_unigene48442
CCGGATGTAAGGTTTGTAATTCACCATTCCCTACCGAAGTCCATTGAAGGCTACCATCAGGAATGTGGCCGTGCTGGCAGGGATAACCCCCCCTCATCTTGTATGCTATACTATAACTATGGTGATTACATTCGAGTAAAGCATATGCTTACACAAGGAGCTGCGGAGCAAAGTCCAATGGTTTCTGGAACTGGGCGTATTGCTGTGACCAATGCAGGAAGAATATTGGAGGCAAACCTTGAGAATCTTTCACGCATGGTTAGTTACTGTGAAAATGATGTGGATTGCAGAAGGGTACTTCAACTTGCTTATTTGGGTGAGAAATTTGATGCCTCAAATTGCAAAAAGCCTGCGATAATTGTAGCAAGA

Ace file of the UniGene sp_v1.1_unigene48442

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to DNA Helicase; K10901 bloom syndrome protein [EC:3.6.1.-]	-	-	75%
FL-Next	sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	dna helicase	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	75%

Source	KEGGs	Term	Identity
AutoFact	Purine metabolism	00230	75%
AutoFact	Lipopolysaccharide biosynthesis	00540	75%
AutoFact	Folate biosynthesis	00790	75%
AutoFact	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	telomere maintenance	GO:0000723	Biological Process	80%
Blast2go	double-strand break repair via homologous recombination	GO:0000724	Biological Process	80%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	0.0	80%
Blast2go	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L840

Fln msg: Distance to subject end: 328 aas, your sequence is shorter than subject: 123 - 1188

Fln protein: PDVRFVIHHSLPKSIEGYHQECGRAGRDNPPSSCMLYYNYGDYIRVKHMLTQGAAEQSPMVSGTGRIAVTNAGRILEANLENLSRMVSYCENDVDCRRVLQLAYLGEKFDASNCKKPAIIVAR

Protein Length: 124

Fln nts: CCGGATGTAAGGTTTGTAATTCACCATTCCCTACCGAAGTCCATTGAAGGCTACCATCAGGAATGTGGCCGTGCTGGCAGGGATAACCCCCCCTCATCTTGTATGCTATACTATAACTATGGTGATTACATTCGAGTAAAGCATATGCTTACACAAGGAGCTGCGGAGCAAAGTCCAATGGTTTCTGGAACTGGGCGTATTGCTGTGACCAATGCAGGAAGAATATTGGAGGCAAACCTTGAGAATCTTTCACGCATGGTTAGTTACTGTGAAAATGATGTGGATTGCAGAAGGGTACTTCAACTTGCTTATTTGGGTGAGAAATTTGATGCCTCAAATTGCAAAAAGCCTGCGATAATTGTAGCAAGA

Fln Alignment:

sp_v1.1_unigene48442___PDVRFVIHHSLPKSIEGYHQECGRAGRDNPPSSCMLYYNYGDYIRVKHMLTQGAAEQSPMVSGTGRIAVTNAGRILEANLENLSRMVSYCENDVDCRRVLQLAYLGEKFDASNCKK
Q8L840_______________PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVA--SSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEKFDSTNCKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain