SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48428

Length: 270 nt

UniGene Fasta

>sp_v1.1_unigene48428
ATGCCTTGAGGCATGGTTTTTTAAAACTAGAAATGGTCAAGTTGATGATCTTTGATGAGTGTCATCATGCACAGGGGCATCATCCCTATGCCAAAATCATGAATGAGCATTATCACACATCTGAAGTCAAGCCAAAAATATTTGGAATGACTGCGTCACCTGTCATAAGAAAGGGTATCTCTTCAAGCCATGATTGTGAGGATCAAATAGCTCGGCTAGAGGATATTCTAGACTCGAAGGTTTATGCGTTGGAGGATAGGAGTGAGCTCG

Ace file of the UniGene sp_v1.1_unigene48428

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endoribonuclease Dicer homolog 3a n=1 Tax=Oryza sativa Japonica Group RepID=DCL3A_ORYSJ	-	-	1.0e-28	66%
FL-Next	sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice).	-	-	0.0	66%
Blast2go	ribonuclease iii family protein	-	-	6.5287e-29	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	maintenance of DNA methylation	GO:0010216	Biological Process	6.5287e-29	74%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	6.5287e-29	74%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	6.5287e-29	74%
Blast2go	double-stranded RNA binding	GO:0003725	Molecular Function	6.5287e-29	74%
Blast2go	protein binding	GO:0005515	Molecular Function	6.5287e-29	74%
Blast2go	nucleolus	GO:0005730	Cellular Component	6.5287e-29	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helicase/UvrB domain	IPR006935	-	6.5287e-29	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5N870

Fln msg: Distance to subject end: 1419 aas, your sequence is shorter than subject: 89 - 1651

Fln protein: ALRHGFLKLEMVKLMIFDECHHAQGHHPYAKIMNEHYHTSEVKPKIFGMTASPVIRKGISSSHDCEDQIARLEDILDSKVYALEDRSEL

Protein Length: 90

Fln nts: ATGCCTTGAGGCATGGTTTTTTAAAACTAGAAATGGTCAAGTTGATGATCTTTGATGAGTGTCATCATGCACAGGGGCATCATCCCTATGCCAAAATCATGAATGAGCATTATCACACATCTGAAGTCAAGCCAAAAATATTTGGAATGACTGCGTCACCTGTCATAAGAAAGGGTATCTCTTCAAGCCATGATTGTGAGGATCAAATAGCTCGGCTAGAGGATATTCTAGACTCGAAGGTTTATGCGTTGGAGGATAGGAGTGAGCTCG

Fln Alignment:

sp_v1.1_unigene48428___ALRHGFLKLEMVKLMIFDECHHAQGHHPYAKIMNEHYHTSEVKPKIFGMTASPVIRKGISSSHDCEDQIARLEDILDSKVYALEDRSEL
Q5N870_______________ALRNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGISSHLDCEGQFCELENLLDAKIYTVSDREEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain