SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48414

Length: 482 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene48414
AATATAGTTGCATATACAGCTTTGATTCAAGGACTTTGCAAATGTAACAGGGCGAAACTTGCCTTAAACTACCTGCAAGAAATGGAAAGGAAGGGCACAGAACCTGAGACATTTATCTATACTGTGCTCATCACTGGTCTTGTTCAAGAAGAGGAAACATTTTTGGCTTGTAAAGTTCTAGAGGAGATGGTTCAGAAGAAAAAGAATCTTAACCCAACTGATAAAAATTACCAGGTCTTCATAGATGGTCTTTACAAGCTAAGTAAAGATGACACAGCTGTTGCAGTTGTAAATGATATTATTGAAAAAGGATGGCTTCCTACCATTCGGAATTTAAATGAATTGGAGAGGAATTGAAAAAGCAAATATGTGAAATGAAAATATCAGTTGGCTCTGAAAGCTAGGAGTTCCCAATTAATTGTATAAGAAGTTACACTTAACTACACTGACTATCAAAAAGTTCATACGATCCTGGAAGGCAG

Ace file of the UniGene sp_v1.1_unigene48414 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T720_RICCO	-	-	2.0e-14	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	pentatricopeptide repeat-containing	-	-	4.49172e-14	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	4.49172e-14	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 172 aas, your sequence is shorter than subject: 119 - 420

Fln protein: NIVAYTALIQGLCKCNRAKLALNYLQEMERKGTEPETFIYTVLITGLVQEEETFLACKVLEEMVQKKKNLNPTDKNYQVFIDGLYKLSKDDTAVAVVNDIIEKGWLPTIRNLNELERN*

Protein Length: 120

Fln nts: AATATAGTTGCATATACAGCTTTGATTCAAGGACTTTGCAAATGTAACAGGGCGAAACTTGCCTTAAACTACCTGCAAGAAATGGAAAGGAAGGGCACAGAACCTGAGACATTTATCTATACTGTGCTCATCACTGGTCTTGTTCAAGAAGAGGAAACATTTTTGGCTTGTAAAGTTCTAGAGGAGATGGTTCAGAAGAAAAAGAATCTTAACCCAACTGATAAAAATTACCAGGTCTTCATAGATGGTCTTTACAAGCTAAGTAAAGATGACACAGCTGTTGCAGTTGTAAATGATATTATTGAAAAAGGATGGCTTCCTACCATTCGGAATTTAAATGAATTGGAGAGGAATTGAAAAAGCAAATATGTGAAATGAAAATATCAGTTGGCTCTGAAAGCTAGGAGTTCCCAATTAATTGTATAAGAAGTTACACTTAACTACACTGACTATCAAAAAGTTCATACGATCCTGGAAGGCAG

Fln Alignment:

sp_v1.1_unigene48414___NIVAYTALIQGLCKCNRAKLALNYLQEMERKGTEPETFIYTVLITGLVQEEETFLACKVLEEMVQKKKNLNPTDKNYQVFIDGLYKLSKDDTAVAVVNDIIEKGWLP
B8LN20_______________DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEM--QARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain