SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48350

Length: 439 nt

UniGene Fasta

>sp_v1.1_unigene48350
CGTCGTGACCTTGGCTGTCACTCAACTTACAATGCACTCAACGGTTCTATTCCAGCGGACTTGGGCCTGCTGCAGAAACTAGAGACACTGCTTCTGGAAGGCAATGAATTTTCAGGCAATATACCGCATCAGTTAGGTAATTTGACGAAACTTAAACAACTATCGATTTCTGGCTTGAGTATTTCTGGTTCTATTCCTTCTATTTCTTCTGGAATATTCGGACTTCGCCTCTCTTATCTATCTCTTAGTCTTAACCTCACAACAAGCCTACCTAAAGCCATTGGCAACTTGACCACGCTGACCTACTTAGCACTTTATCAAAGTGGACTCACTCACATCCCTGTAGAAATTGCCAATTTGACCAAATTGACCTCCTTAGTTCTCCGTGAGAATAATCTCACTGACATCTTTGAATGGATTGCCAAGTTGACCAGATTGA

Ace file of the UniGene sp_v1.1_unigene48350

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small GTP-binding protein domain n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3MD20_ANAVT	-	-	2.0e-07	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 318 aas, your sequence is shorter than subject: 146 - 818

Fln protein: RRDLGCHSTYNALNGSIPADLGLLQKLETLLLEGNEFSGNIPHQLGNLTKLKQLSISGLSISGSIPSISSGIFGLRLSYLSLSLNLTTSLPKAIGNLTTLTYLALYQSGLTHIPVEIANLTKLTSLVLRENNLTDIFEWIAKLTRL

Protein Length: 147

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTACAATGCACTCAACGGTTCTATTCCAGCGGACTTGGGCCTGCTGCAGAAACTAGAGACACTGCTTCTGGAAGGCAATGAATTTTCAGGCAATATACCGCATCAGTTAGGTAATTTGACGAAACTTAAACAACTATCGATTTCTGGCTTGAGTATTTCTGGTTCTATTCCTTCTATTTCTTCTGGAATATTCGGACTTCGCCTCTCTTATCTATCTCTTAGTCTTAACCTCACAACAAGCCTACCTAAAGCCATTGGCAACTTGACCACGCTGACCTACTTAGCACTTTATCAAAGTGGACTCACTCACATCCCTGTAGAAATTGCCAATTTGACCAAATTGACCTCCTTAGTTCTCCGTGAGAATAATCTCACTGACATCTTTGAATGGATTGCCAAGTTGACCAGATTGA

Fln Alignment:

sp_v1.1_unigene48350___NALNGSIPADXXXXXXXXXXXXEGNEF-----SGNIPHQLGNLTKLKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAIGNLTTLTYLALYQSGLTH-IPVEIANLTKLTSLVLRENNLT-DIFEWIAKLTRL
B8LQX6_______________NRLSGNIPSQFGSLRELFQLSIYGPEYVKGSISGSIPSEIGNCSSL--VWLDFGNNRVQGSVPMSIFRLPLSTLSLGKNYLTGSIPEAIGNLSQLTSLSLHQNNFTGGIPEAIGNLIQLTSLILNQNNFTGGIPEAIGNLSQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain