SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48329

Length: 335 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene48329
CCTTCCTTCTGGTAAATTACCAGAAGGAAGGGATATAGCGGTTAAAGTGCTATCATTGTTATGCAAACAAGGAGTTTGCCAGTTTTTGAATGAGATTGATATTCTTTCTACTGTGCACCATAAAAACCTGGTTTCTTTACTGGGCTATTGTAATGAATCGAAAAAACTGATGCTTCTCTACGAGCACATGTCTGGAGGGTCGTTAAAGGACCGCCTTTATGGAGAATCAGAACTAAATTGGAAATCAAGGATCAAGATAGCTTTGGATGCAGCACTGGGACTTGAATATATGCACGTAGTTTGCACCCCCAAGATTATTCACAGGGATATCAAGA

Ace file of the UniGene sp_v1.1_unigene48329

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	2.0e-08	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	protein	-	-	1.70945e-29	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.70945e-29	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.70945e-29	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.70945e-29	71%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	1.70945e-29	71%
Blast2go	Protein kinase-like domain	IPR011009	-	1.70945e-29	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 269 aas, your sequence is shorter than subject: 111 - 656

Fln protein: LPSGKLPEGRDIAVKVLSLLCKQGVCQFLNEIDILSTVHHKNLVSLLGYCNESKKLMLLYEHMSGGSLKDRLYGESELNWKSRIKIALDAALGLEYMHVVCTPKIIHRDIK

Protein Length: 112

Fln nts: CCTTCCTTCTGGTAAATTACCAGAAGGAAGGGATATAGCGGTTAAAGTGCTATCATTGTTATGCAAACAAGGAGTTTGCCAGTTTTTGAATGAGATTGATATTCTTTCTACTGTGCACCATAAAAACCTGGTTTCTTTACTGGGCTATTGTAATGAATCGAAAAAACTGATGCTTCTCTACGAGCACATGTCTGGAGGGTCGTTAAAGGACCGCCTTTATGGAGAATCAGAACTAAATTGGAAATCAAGGATCAAGATAGCTTTGGATGCAGCACTGGGACTTGAATATATGCACGTAGTTTGCACCCCCAAGATTATTCACAGGGATATCAAGA

Fln Alignment:

sp_v1.1_unigene48329___GKLPEGRDIAVKVLSLLCKQGVCQFLNEIDILSTVHHKNLVSLLGYCNESKKLMLLYEHMSGGSLKDRLYGESELN--WKSRIKIALDAALGLEYMHVVCTPKIIHRDIK
C0PRI9_______________GILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain