SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48308

Length: 503 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene48308

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lectin protein kinase family protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	71%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	71%
Blast2go	Protein kinase-like domain	IPR011009	-	71%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 309 and 309, Distance to subject end: 175 aas, your sequence is shorter than subject: 168 - 431

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: RRILEDAVGSATQITFDELKAITRDFSRKLGSGGFGSVYEGVLGDGTMVAVKQLEDAFQGYDEFRTEIATLGSLSHVNLVRLQGFCAQESHHLLVYEYMANRxxDGWLFSTDDTRLLSWGTRLSIAVDTARGLAFLHEECRECIVHLDVKPENILLDDKFRAKLSDFG

Protein Length: 169

Fln nts: AGACGGATTCTTGAAGACGCTGTCGGTTCTGCTACCCAGATTACCTTCGACGAACTGAAGGCAATCACGCGAGATTTCAGTCGGAAGCTCGGATCTGGTGGCTTCGGCTCTGTGTATGAGGGAGTACTTGGGGACGGAACCATGGTAGCTGTGAAGCAATTGGAGGACGCGTTCCAGGGTTACGACGAATTCCGAACGGAGATAGCGACGCTGGGAAGCCTAAGCCATGTCAACCTCGTCCGACTTCAGGGATTCTGCGCCCAAGAATCCCATCACCTGCTCGTCTACGAATACATGGCGAACCGTxxxxxxGACGGCTGGCTCTTCTCTACAGACGATACTAGGCTTCTGAGTTGGGGTACCCGGTTGAGCATCGCCGTAGACACTGCTCGCGGACTGGCGTTCTTACACGAAGAATGCCGCGAATGCATTGTGCATCTCGATGTAAAACCCGAGAACATTCTCCTCGACGATAAGTTCAGGGCCAAGCTATCAGATTTCGGG

Fln Alignment:

sp_v1.1_unigene48308___LEDAVGSATQITFDELKAITRDFSRKLGSGGFGSVYEGVLGDGTMVAVKQL-EDAFQGYDEFRTEIATLGSLSHVNLVRLQGFCAQESHHLLVYEYMANRSLDGWLFSTDDTRLLSWGTRLSIAVDTARGLAFLHEECRECIVHLDVKPENILLDDKFRAKLSDFG
A9NM60_______________LKNLTGLPAIFTYETIEIATGGFSKEIGKGGFGTVYEGILEDDTLVAVKCLVNESRQGQAEFCAEIGTTSSINHSNLVRLHGICVEGQHRILVYEFMANGSLDRWLFDSD--KWLDWKTRYSIALDTARGLAYLHEESRLCILHLDVKPQNILVDEYFKAKVSDFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain