SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48307

Length: 398 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene48307
CGTCGTGACCTTGGCTGTCACTCATTTTTCTTTTCTGTGCTGTTTACCCTCTTCCTTTCCTCTTCATTTGCTCACTCAACTCACGATGATCGAATTTCATTGCTGGAATTCAAGTCCCTTATTGCCAAGGATCCTCAGCTTTCCATGGCCAACTGGAGTCCCGGGAGTCCGTTATGCATTTGGACTGGCATTACCTGCAGCAGACGCCGGGAAAGAGTCATCGCCCTTAACCTCACTGGTATGGATATGCAAGGCCCCATTTCTCCATTCCTAGGGAATTTGTCTTTTCTCCAATCGCTTGATCTTTCACATAATGCGCTCTACGGCGATATTCCACCCCAACTGGGACGTCTCTTTCGTCTGAGAGAACTTTCTCTCGAATTTAACATTCTAAGTGG

Ace file of the UniGene sp_v1.1_unigene48307

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SS82_RICCO	-	-	4.0e-17	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	serine-threonine protein plant-	-	-	1.38354e-18	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	1.38354e-18	68%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 452 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 132 - 551

Fln protein: RRDLGCHSFFFSVLFTLFLSSSFAHSTHDDRISLLEFKSLIAKDPQLSMANWSPGSPLCIWTGITCSRRRERVIALNLTGMDMQGPISPFLGNLSFLQSLDLSHNALYGDIPPQLGRLFRLRELSLEFNILS

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCTTTTCTGTGCTGTTTACCCTCTTCCTTTCCTCTTCATTTGCTCACTCAACTCACGATGATCGAATTTCATTGCTGGAATTCAAGTCCCTTATTGCCAAGGATCCTCAGCTTTCCATGGCCAACTGGAGTCCCGGGAGTCCGTTATGCATTTGGACTGGCATTACCTGCAGCAGACGCCGGGAAAGAGTCATCGCCCTTAACCTCACTGGTATGGATATGCAAGGCCCCATTTCTCCATTCCTAGGGAATTTGTCTTTTCTCCAATCGCTTGATCTTTCACATAATGCGCTCTACGGCGATATTCCACCCCAACTGGGACGTCTCTTTCGTCTGAGAGAACTTTCTCTCGAATTTAACATTCTAAGTGG

Fln Alignment:

sp_v1.1_unigene48307___LEFKSLIAKDPQLSMANWSPGSPLCIWTGITCSRRRERVIALNLTGMDMQGPISPFLGNLSFLQSLDLSHNALYGDIP
B8LRW5_______________MEFKATLSLDPNKALSGWNTSVSLCSWTGVQCSLRHQRVVSLNLTGMGLQGPISPLLANLSFLRVLDLSNNSHHGYIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain