SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48267

Length: 306 nt

UniGene Fasta

>sp_v1.1_unigene48267
AGAAAAGAAAGAACTGTCCAAAGTCACAATGGTGGTTTGACTGCCTTTAAGCTTGCATCTGTCTCAACCTGTCGCAAGGAGTGGTTCATCCCTCCAGCCATTCCTCCGGGCTTTGTAACTCGACACAAGTTTTCAGTTCCTCTAGAGGTTGAACGCAATTTTTTTCAGCTGCCCGCCCCAGAGGCATCTCCTCCACATGACTCAGAGCTGTGCATGATGATTGAGGGCCTTGCAACTTTTGTGGCAAGAAGTGGTAAAATATTTGAAGATCTCTCCAGAGAGAAGAACGCAAACAATCCGTTATTT

Ace file of the UniGene sp_v1.1_unigene48267

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RE60_RICCO	-	-	1.0e-18	48%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	50%
Blast2go	rna binding	-	-	2.31145e-18	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin polar transport	GO:0009926	Biological Process	2.31145e-18	57%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	2.31145e-18	57%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	2.31145e-18	57%
Blast2go	protein binding	GO:0005515	Molecular Function	2.31145e-18	57%
Blast2go	nucleus	GO:0005634	Cellular Component	2.31145e-18	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SWAP/Surp	IPR000061	-	2.31145e-18	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9I2N4

Fln msg: Distance to subject end: 521 aas, your sequence is shorter than subject: 102 - 965

Fln protein: RKERTVQSHNGGLTAFKLASVSTCRKEWFIPPAIPPGFVTRHKFSVPLEVERNFFQLPAPEASPPHDSELCMMIEGLATFVARSGKIFEDLSREKNANNPLF

Protein Length: 103

Fln nts: AGAAAAGAAAGAACTGTCCAAAGTCACAATGGTGGTTTGACTGCCTTTAAGCTTGCATCTGTCTCAACCTGTCGCAAGGAGTGGTTCATCCCTCCAGCCATTCCTCCGGGCTTTGTAACTCGACACAAGTTTTCAGTTCCTCTAGAGGTTGAACGCAATTTTTTTCAGCTGCCCGCCCCAGAGGCATCTCCTCCACATGACTCAGAGCTGTGCATGATGATTGAGGGCCTTGCAACTTTTGTGGCAAGAAGTGGTAAAATATTTGAAGATCTCTCCAGAGAGAAGAACGCAAACAATCCGTTATTT

Fln Alignment:

sp_v1.1_unigene48267___KERTVQSHNGGLTAFKLASVSTCRKEWFIPPAIPPGFVTRHKFSVPLEVERNFFQL--PAPEASPPHDSELCMMIEGLATFVARSGKIFEDLSREKNANNPLF
B9I2N4_______________KPKLVWKEQGVLPGFKVASNSDYQLERFDPPVIPKDFLPHHKFPGPLEFDKKPATLSPPPPEVPPPEDDNSKVLIEGVATLVARCGKLFEDLSREKNQSNPLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain