SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48167

Length: 518 nt

UniGene Fasta

>sp_v1.1_unigene48167
ATCGATGAGTCGAGATTATGGAATTGCACCACAATGTGGTCACTATGCATGCGTTGTTGACCTTCTTGGCCGTGCTGGGCGTCTGGATGAGGCAGAGGATCTGGTCAGCAAGATGCCTGTTGAACCTGATGCTGTTGTATGGGGTTCCTTGCTTGGTGCTTGTAGAATTCACGGCAATATGGAAATAGGAAAACGTGCTGCAGAATGTCTTCTTCGGTTGGAACCACAGCACCCTGGAGCCTATGTGTTACTCTCAAACATCTTTTCAGCTGCTGGCCGCTGGGATGAGGCAGCAGAGGTTCGGAAAGCGATGAATGACAAAGGGGTGAAAAAGGAGCCAGGTCTCAGTTGGATTGAAGTCAACAACAAGATACACACATTTGTTGCAAGGGATATGTCACATCCACAAACTGAAGAAATTTACGCAAAATTGGAGGAATTGACAGCTTATTTAAAGGAGTTAGGTTATGTGCCTCATACAAACTTTGTATTGCATGATCTGGAGGAGGAGCATAAGG

Ace file of the UniGene sp_v1.1_unigene48167

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	pentatricopeptide repeat protein 79	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	75%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 171 - 246

Fln protein: MSRDYGIAPQCGHYACVVDLLGRAGRLDEAEDLVSKMPVEPDAVVWGSLLGACRIHGNMEIGKRAAECLLRLEPQHPGAYVLLSNIFSAAGRWDEAAEVRKAMNDKGVKKEPGLSWIEVNNKIHTFVARDMSHPQTEEIYAKLEELTAYLKELGYVPHTNFVLHDLEEEHK

Protein Length: 172

Fln nts: ATCG_-_ATGAGTCGAGATTATGGAATTGCACCACAATGTGGTCACTATGCATGCGTTGTTGACCTTCTTGGCCGTGCTGGGCGTCTGGATGAGGCAGAGGATCTGGTCAGCAAGATGCCTGTTGAACCTGATGCTGTTGTATGGGGTTCCTTGCTTGGTGCTTGTAGAATTCACGGCAATATGGAAATAGGAAAACGTGCTGCAGAATGTCTTCTTCGGTTGGAACCACAGCACCCTGGAGCCTATGTGTTACTCTCAAACATCTTTTCAGCTGCTGGCCGCTGGGATGAGGCAGCAGAGGTTCGGAAAGCGATGAATGACAAAGGGGTGAAAAAGGAGCCAGGTCTCAGTTGGATTGAAGTCAACAACAAGATACACACATTTGTTGCAAGGGATATGTCACATCCACAAACTGAAGAAATTTACGCAAAATTGGAGGAATTGACAGCTTATTTAAAGGAGTTAGGTTATGTGCCTCATACAAACTTTGTATTGCATGATCTGGAGGAGGAGCATAAGG

Fln Alignment:

sp_v1.1_unigene48167___MSRDYGIAPQCGHYACVVDLLGRAGRLDEAEDLVSKMPVEPDAVVWGSLLGACRIHGNMEIGKRAAECLLRLEPQHPGAYVLLSNIFSAAGRWDEAAEVRKAMNDKGVKKEPGLSWIEVNNKIHTFVARDMSHPQTEEIYAKLEELTAYLKELGYVPHTNFVLHDLEEEHK
D5AAE0_______________MCRDYCIAPREVHYACMIDLLGRAGRLDEARDFMKTIPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain