SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48156

Length: 451 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene48156
ATGACGAAGTTTCTAGGGTTTGCTGAATCCGTGGCCATGAGCAAAAGGTCGAGCGAAAGGCTCTTCAGGGTGCTCGACATGTACGAGATTCTGCGGGACGTAAAGCCCCACATCGACACCGTTTTCGACCACGACTCATGTGCCAGCATGCGGACGCAAGCGTCTACGACCCTTGTTCTGCTCGGTAATTTGGCACGGGGGATTTTGAGGGAGTTCCAGAATGCAATCGAGGAAGAGAATTCAAAGACTCCCGTGCCAGGAGGCACGATTCATCCGCTTACGAGATATGTTATGAATTATCTGATTTTTCTGTCCGATTACAAGGAGACTCTCACCGACATAACAGCCAATGATCCCACTAATATCTCCAAGGGCCTGCCCAATAGCGTCATGGACTTGTTTGGCGATTTGGATGGGGATGATGATGAACTGGGGAGCCCAGCCTCTGCTC

Ace file of the UniGene sp_v1.1_unigene48156 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATEXO70D3 (exocyst subunit EXO70 family protein D3); protein binding; K07195 exocyst complex component 7	-	-	3.0e-28	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	protein binding	-	-	6.10937e-35	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exo70 exocyst complex subunit	IPR004140	-	6.10937e-35	71%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	6.10937e-35	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF7

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 150 - 627

Fln protein: MTKFLGFAESVAMSKRSSERLFRVLDMYEILRDVKPHIDTVFDHDSCASMRTQASTTLVLLGNLARGILREFQNAIEEENSKTPVPGGTIHPLTRYVMNYLIFLSDYKETLTDITANDPTNISKGLPNSVMDLFGDLDGDDDELGSPASA

Protein Length: 151

Fln nts: ATGACGAAGTTTCTAGGGTTTGCTGAATCCGTGGCCATGAGCAAAAGGTCGAGCGAAAGGCTCTTCAGGGTGCTCGACATGTACGAGATTCTGCGGGACGTAAAGCCCCACATCGACACCGTTTTCGACCACGACTCATGTGCCAGCATGCGGACGCAAGCGTCTACGACCCTTGTTCTGCTCGGTAATTTGGCACGGGGGATTTTGAGGGAGTTCCAGAATGCAATCGAGGAAGAGAATTCAAAGACTCCCGTGCCAGGAGGCACGATTCATCCGCTTACGAGATATGTTATGAATTATCTGATTTTTCTGTCCGATTACAAGGAGACTCTCACCGACATAACAGCCAATGATCCCACTAATATCTCCAAGGGCCTGCCCAATAGCGTCATGGACTTGTTTGGCGATTTGGATGGGGATGATGATGAACTGGGGAGCCCAGCCTCTGCTC

Fln Alignment:

sp_v1.1_unigene48156___KFLGFAESVAMSKRSSERLFRVLDMYEILRDVKPHIDTVFDHDSCASMRTQASTTLVLLGNLARGILREFQNAIEEENSKTPVPGGTIHPLTRYVMNYLIFLSDYKETLTDITANDP
A9NUF7_______________KVLAFGESVTVSKKSSERLFRVLDMYETLSDLMPDIDAVYCQESCASVRTLASTIFVQLGDSALGIMVVFENAIKAENSKTSVPGGTIDPLTGYVMKYLSFLSDYKETLTNMMANTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain