SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48146

Length: 416 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene48146
AATTCAAGACTAAATACAAGAAGGATTTGACCACCTCTGATCGAGCTCTTCGACGATTGCGAACAGCATGTGAGCGAGCAAAGTGCACCTTATCTGCCTCTCCTCGAGCTACCATTGAAATCGATTCATTATTCGAAGGTGTTGACTTCAACTCCTCTATTACCCGAGCTCGATTTGAAGATCTTTGTGGTGATTATTTCCGAAACTGTATTGGCCCTGTCGAACAAGTATTACGAGATTCCAAGATGGCCAAGAGCGATGTTCACGAAGTTGTCTTAGTTGGTGGATCTACTCGTATTCCTAAAGTACAAGAATTGATTAAGAACTTCTTCAACGGCAAAGAACCATGCAAATCTATTAACCCTGATGAAGCTGTTGCTTATGGTGCTGCTGTACAAGCCGCTATCTTATCTGGC

Ace file of the UniGene sp_v1.1_unigene48146

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	70-kDa heat shock protein (Fragment) n=1 Tax=unidentified soil organism RepID=P97981_9ZZZZ	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	heat shock protein 70	-	-	89%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	89%
Blast2go	Heat shock protein 70	IPR013126	-	89%
Blast2go	Heat shock protein 70, conserved site	IPR018181	-	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Distance to subject end: 265 aas, your sequence is shorter than subject: 138 - 652

Fln protein: FKTKYKKDLTTSDRALRRLRTACERAKCTLSASPRATIEIDSLFEGVDFNSSITRARFEDLCGDYFRNCIGPVEQVLRDSKMAKSDVHEVVLVGGSTRIPKVQELIKNFFNGKEPCKSINPDEAVAYGAAVQAAILSG

Protein Length: 139

Fln nts: AATTCAAGACTAAATACAAGAAGGATTTGACCACCTCTGATCGAGCTCTTCGACGATTGCGAACAGCATGTGAGCGAGCAAAGTGCACCTTATCTGCCTCTCCTCGAGCTACCATTGAAATCGATTCATTATTCGAAGGTGTTGACTTCAACTCCTCTATTACCCGAGCTCGATTTGAAGATCTTTGTGGTGATTATTTCCGAAACTGTATTGGCCCTGTCGAACAAGTATTACGAGATTCCAAGATGGCCAAGAGCGATGTTCACGAAGTTGTCTTAGTTGGTGGATCTACTCGTATTCCTAAAGTACAAGAATTGATTAAGAACTTCTTCAACGGCAAAGAACCATGCAAATCTATTAACCCTGATGAAGCTGTTGCTTATGGTGCTGCTGTACAAGCCGCTATCTTATCTGGC

Fln Alignment:

sp_v1.1_unigene48146___FKTKYKKDLTTSDRALRRLRTACERAKCTLSASPRATIEIDSLFEGVDFNSSITRARFEDLCGDYFRNCIGPVEQVLRDSKMAKSDVHEVVLVGGSTRIPKVQELIKNFFNGKEPCKSINPDEXXXXXXXXXXXILSG
B8LRY5_______________FKRKYKKDLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain