SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48134

Length: 560 nt

UniGene Fasta

>sp_v1.1_unigene48134
TCGGCAAGGTTTACAAGGGCGTTCTCCCTAGCAGCGGCGATGAAGTTGCGGTGAAATCTCTAATGAAGGAGTTCACGGAGGGAATGAAGGGGTTCGTGGCAGGGATCTCGACCATGGGGCGCACGCAGCACAGGAACCTGGTTCCTCTCCGAGGCTGGTGCAGGATACGGAAGCAACTATTCATAGTTTACGACTACATGCCAAACGGCAGCCTGGATAGACTCATATTCGGGAAGCCAACGACCATCCTGCCATGGCCTCGGAGATACGCGATCCTGAAGGGCGTGGCGGCAGGACTACTTTATCTGCACGAAGAATGGGAGAAGAGGGTCATCCACAGAGACATCAAGTCAAGCAACGTATTGCTGGATTCAGATCTCAACGCGCGGCTGGGGGACTTCGGCCTCGCCCGCCTTTATGAACACAGCGAGAATCCCGGAACGACTCGTGTGGTGGGAACGTTGGGCTACATAGCGCCGGAGCTCATACAGACGGGAAAGGCGACTCCGAGCTCTGACATGTTCAGCTTTGGCGTTCTGCTGTTGGAAGTGGCGTGCGGG

Ace file of the UniGene sp_v1.1_unigene48134

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	kinase, putative (EC:2.7.11.22)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	80%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	80%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	80%
Blast2go	Protein kinase-like domain	IPR011009	-	80%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	80%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 186 - 636

Fln protein: GKVYKGVLPSSGDEVAVKSLMKEFTEGMKGFVAGISTMGRTQHRNLVPLRGWCRIRKQLFIVYDYMPNGSLDRLIFGKPTTILPWPRRYAILKGVAAGLLYLHEEWEKRVIHRDIKSSNVLLDSDLNARLGDFGLARLYEHSENPGTTRVVGTLGYIAPELIQTGKATPSSDMFSFGVLLLEVACG

Protein Length: 187

Fln nts: TCGGCAAGGTTTACAAGGGCGTTCTCCCTAGCAGCGGCGATGAAGTTGCGGTGAAATCTCTAATGAAGGAGTTCACGGAGGGAATGAAGGGGTTCGTGGCAGGGATCTCGACCATGGGGCGCACGCAGCACAGGAACCTGGTTCCTCTCCGAGGCTGGTGCAGGATACGGAAGCAACTATTCATAGTTTACGACTACATGCCAAACGGCAGCCTGGATAGACTCATATTCGGGAAGCCAACGACCATCCTGCCATGGCCTCGGAGATACGCGATCCTGAAGGGCGTGGCGGCAGGACTACTTTATCTGCACGAAGAATGGGAGAAGAGGGTCATCCACAGAGACATCAAGTCAAGCAACGTATTGCTGGATTCAGATCTCAACGCGCGGCTGGGGGACTTCGGCCTCGCCCGCCTTTATGAACACAGCGAGAATCCCGGAACGACTCGTGTGGTGGGAACGTTGGGCTACATAGCGCCGGAGCTCATACAGACGGGAAAGGCGACTCCGAGCTCTGACATGTTCAGCTTTGGCGTTCTGCTGTTGGAAGTGGCGTGCGGG

Fln Alignment:

sp_v1.1_unigene48134___GKVYKGVLPSSGDEVAVKSLMKEFTEGMKGFVAGISTMGRTQHRNLVPLRGWCRIRKQLFIVYDYMPNGSLDRLIFGKPTTILPWPRRYAILKGVAAGLLYLHEEWEKRVIHRDIKSSNVLLDSDLNARLGDFGLARLYEHSENPGTTRVVGTLGYIAPELIQTGKATPSSDMFSFGVLLLEVACG
A9NVC0_______________GMVYKGVLPSSGQEVAVKCITTEFTEGMKGFVAEISSMGRLRHRNLVQLRGWCRRHTQLFIVYDYMPNGSLDKLIFGNPTTVLPWHRRYAILKGVAAGLLYLHEQWEKRVVHRDIKSSNVLLDSELNGRLGDFGLARLYDHAENPETTHVVGTLGYIAPELIQTGKATPSSDVFSFGVLLLEVACG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain