SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48128

Length: 457 nt

UniGene Fasta

>sp_v1.1_unigene48128
ATGGGGATGAACTGTTAATTCTTCACAGCTTTTATTTATTAGAATGAAGGGTTTTCAAAAGCCCCATGTCGTCTTGGTTCCATTCCCGGCGTTGGGTCACTCCATCCCCTTCCTTGACCTTGCAAAGCTGCTGGCTTTGCACGGCGCCACAGTCAGCTATGTCACGACGCCTGCAAACGTCAGCCGGCTAGAAGGAACCATGGCCGAAGCTCAATCTTCCGGTTTGGATATTTGTGCTGTTGTCCTCCCGACGCCGGCCGTGGAAGGGCTGCAGGAGGGACGCGAGAGCGCCGATGTCATTCCCTCGTCTGATGTCGTTTTCAATCTTGCCAAGAAGCTTGCAGAGCCTTTCGACCGCTGGTTCCACCAACAGTTCCAAGTAGACGAAGAAGAAACGGTCGGATCTCGGCCGGTTTGCATTATCAGCGACATATTCATGCTGTGGACTCTGCACACC

Ace file of the UniGene sp_v1.1_unigene48128

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucosyl transferase n=1 Tax=Triticum aestivum RepID=C5HUX8_WHEAT	-	-	2.0e-19	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	udp-glucosyl transferase	-	-	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWC5

Fln msg: Distance to subject end: 370 aas, your sequence is shorter than subject: 138 - 510

Fln protein: MKGFQKPHVVLVPFPALGHSIPFLDLAKLLALHGATVSYVTTPANVSRLEGTMAEAQSSGLDICAVVLPTPAVEGLQEGRESADVIPSSDVVFNLAKKLAEPFDRWFHQQFQVDEEETVGSRPVCIISDIFMLWTLHT

Protein Length: 139

Fln nts: ATGGGGATGAACTGTTAATTCTTCACAGCTTTTATTTATTAGA_-_ATGAAGGGTTTTCAAAAGCCCCATGTCGTCTTGGTTCCATTCCCGGCGTTGGGTCACTCCATCCCCTTCCTTGACCTTGCAAAGCTGCTGGCTTTGCACGGCGCCACAGTCAGCTATGTCACGACGCCTGCAAACGTCAGCCGGCTAGAAGGAACCATGGCCGAAGCTCAATCTTCCGGTTTGGATATTTGTGCTGTTGTCCTCCCGACGCCGGCCGTGGAAGGGCTGCAGGAGGGACGCGAGAGCGCCGATGTCATTCCCTCGTCTGATGTCGTTTTCAATCTTGCCAAGAAGCTTGCAGAGCCTTTCGACCGCTGGTTCCACCAACAGTTCCAAGTAGACGAAGAAGAAACGGTCGGATCTCGGCCGGTTTGCATTATCAGCGACATATTCATGCTGTGGACTCTGCACACC

Fln Alignment:

sp_v1.1_unigene48128___MKGFQKPHVVLVPFPALGHSIPFLDLAKLLALHGATVSYVTTPANVSRLEGTMAEAQSSGLDICAVVLPTPAVEGLQEGRESADVIPSS--DVVFNLAKKLAEPFDRWFHQQFQVDEEETVGSRPVCIISDIFMLWTL
A9NWC5_______________MKGSQKPHVVLLPFPAMGHSIPFLDLARLLALNGAAVSCVTTGANASRLEGAMAESQSAGLDIRSVLLTTPAVEGLPEGRESADVLPPELIDLLFSFAEKLAEPFERWLHQQLQQEQEETGRSPPVCIISDIMMPWTI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain