SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48091

Length: 320 nt

UniGene Fasta

>sp_v1.1_unigene48091
ATGGGGACTTATAAATACATGCCCGGGCACACCTATTCGGGTTATAAATAACCTTCGGATGTGTGGTGATTGCCACACTACTACCAAGTTTATCTCCAGGTTTGTAGGGCGAGAAATTTTTGTTAGAGATACCAATCGGTTCCATCATTTTAGGGGTGGAATTTGTTCTTGTGGAGTTTACTGGTGATGATAATTCAAGTGGATGATGATTTAAACTGGCTATTAGCCATGAGTTGTAGCCAGGCACCAGCTATTTATTTTCTCATCACTAATGTCCATATATGGAGATCTTAGAAGGCATCATTTGGTTTTGCACATTC

Ace file of the UniGene sp_v1.1_unigene48091

If you push the Download ace button, you will download an ace file of this UniGene.

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Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	pentatricopeptide repeat-containing protein	-	-	3.88947e-21	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 62 - 246

Fln protein: WGLINTCPGTPIRVINNLRMCGDCHTTTKFISRFVGREIFVRDTNRFHHFRGGICSCGVYW*

Protein Length: 63

Fln nts: ATGGGGACTTATAAATACATGCCCGGGCACACCTATTCGGGTTATAAATAACCTTCGGATGTGTGGTGATTGCCACACTACTACCAAGTTTATCTCCAGGTTTGTAGGGCGAGAAATTTTTGTTAGAGATACCAATCGGTTCCATCATTTTAGGGGTGGAATTTGTTCTTGTGGAGTTTACTGGTGA___TGATAATTCAAGTGGATGATGATTTAAACTGGCTATTAGCCATGAGTTGTAGCCAGGCACCAGCTATTTATTTTCTCATCACTAATGTCCATATATGGAGATCTTAGAAGGCATCATTTGGTTTTGCACATTC

Fln Alignment:

sp_v1.1_unigene48091___WGLINTCPGTPIRVINNLRMCGDCHTTTKFISRFVGREIFVRDTNRFHHFRGGICSCGVYW
D5AAE0_______________FGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain